halophFGD

Basic Information

Locus ID: Ag11G03909

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: calcium-dependent protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	106429103	106433319	-	Ag11G03909

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.77	57,275.81 Da	48.55	88.37	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05117	STKc_CAMK	41	299	1.14593E-136	-
Pfam	PF00069	Protein kinase domain	42	300	2.5E-72	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	39	301	7.28E-88	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	44	128	1.3E-24	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	129	338	1.5E-64	-
SMART	SM00220	serkin_6	42	300	4.5E-100	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	42	300	50.279598	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	48	71	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	162	174	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	459	478	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04515 (calcium/calmodulin-dependent protein kinase (CaM kinase) II [EC:2.7.11.17])

Pathway:

ko04012 (ErbB signaling pathway) map04012 (ErbB signaling pathway) ko04020 (Calcium signaling pathway) map04020 (Calcium signaling pathway) ko04024 (cAMP signaling pathway) map04024 (cAMP signaling pathway) ko04066 (HIF-1 signaling pathway) map04066 (HIF-1 signaling pathway) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) map04217 (Necroptosis) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04745 (Phototransduction - fly) map04745 (Phototransduction - fly) ko04750 (Inflammatory mediator regulation of TRP channels) map04750 (Inflammatory mediator regulation of TRP channels) ko04916 (Melanogenesis) map04916 (Melanogenesis)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G12580.1	phosphoenolpyruvate carboxylase-related kinase 1.
RefSeq	XP_017236659.1	PREDICTED: calcium-dependent protein kinase 26 [Daucus carota subsp. sativus]
Swiss-Prot	Q3E9C0	Calcium-dependent protein kinase 34 OS=Arabidopsis thaliana OX=3702 GN=CPK34 PE=2 SV=1
TrEMBL	A0A169WLW7	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005676 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	29.219778	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	22.591213	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.428328	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	21.755142	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	20.48807	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	30.222637	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	23.826075	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	22.698792	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	36.954739	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	31.060047	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	34.483139	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	32.927498	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	31.937429	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	22.95714	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	10.566368	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.322086	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.066868	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	13.170061	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	13.810921	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	17.135096	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	16.408327	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	23.269697	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	21.443008	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.79563	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	22.476067	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	17.901754	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	10.885274	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	13.758602	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.0089	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.308121		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	13.072219		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	10.016632		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	32.830669		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	25.684134		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	36.585354		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	17.134026		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	18.419373		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	15.384833		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	21.590534	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	9.063923	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.017908	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	67.273643	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	74.71431	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	121.827148	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	84.821045	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	54.234516	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	57.844933	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	26.334106	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	32.176109	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	31.530304	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14042, jg37166
Aizoaceae	Mesembryanthemum crystallinum	1	gene_16094
Amaranthaceae	Atriplex hortensis	1	Ah018978
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg15489, Sbi_jg56301
Amaranthaceae	Salicornia europaea	1	Seu_jg26767
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00006602
Amaranthaceae	Suaeda glauca	2	Sgl02066, Sgl07219
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000000013, gene:ENSEOMG00000028669 ... gene:ENSEOMG00000044757
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0002210, CQ.Regalona.r1.3BG0002330
Anacardiaceae	Pistacia vera	2	pistato.v30143560, pistato.v30182140
Apiaceae	Apium graveolens	1	Ag11G03909
Arecaceae	Cocos nucifera	2	COCNU_09G001230, scaffold018491G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103721378, gene-LOC103723343
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.425.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G26653, Ftri6G23869
Brassicaceae	Arabidopsis thaliana	1	AT1G12580.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007365m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g11180.v2.2
Brassicaceae	Brassica nigra	2	BniB02g007500.2N, BniB03g005210.2N
Casuarinaceae	Casuarina glauca	1	Cgl02G2143
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno17g01100
Dunaliellaceae	Dunaliella salina	3	Dusal.0190s00004.v1.0, Dusal.0529s00009.v1.0 ... Dusal.0744s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g07770
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11825
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2211, evm.TU.LG10.1332
Plantaginaceae	Plantago ovata	1	Pov_00040897
Plumbaginaceae	Limonium bicolor	1	Lb3G21010
Poaceae	Echinochloa crus-galli	3	AH06.469, BH06.147, CH06.142
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0506870, gene-QOZ80_6BG0458570
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0642750.1
Poaceae	Oryza coarctata	2	Oco11G001210, Oco12G001120
Poaceae	Oryza sativa	1	LOC_Os06g03682.1
Poaceae	Paspalum vaginatum	1	gene-BS78_10G019400
Poaceae	Sporobolus alterniflorus	3	Chr11G024070, Chr14G000960, Chr21G000050
Poaceae	Thinopyrum elongatum	1	Tel7E01G124700
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG063810, gene_TRIDC7AG006080
Poaceae	Triticum aestivum	3	TraesCS4A02G432300.1, TraesCS7D02G052900.1 ... TraesCSU02G091900.1
Poaceae	Zea mays	1	Zm00001eb269440_P001
Poaceae	Zoysia japonica	2	nbis-gene-40279, nbis-gene-51178
Poaceae	Zoysia macrostachya	2	Zma_g29021, Zma_g31262
Portulacaceae	Portulaca oleracea	1	evm.TU.LG11.1583
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g10460
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1330 ... evm.TU.Scaffold_14_RagTag.243
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12634, nbisL1-mrna-18139, nbisL1-mrna-29177
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-1873, nbisL1-mrna-3011, nbisL1-mrna-3905 ... nbisL1-mrna-6823
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12903, nbisL1-mrna-2118, nbisL1-mrna-8470
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000007l.225, evm.TU.utg000008l.103 ... evm.TU.utg000010l.340
Rhizophoraceae	Kandelia obovata	3	Maker00000674, Maker00009093, Maker00018439
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-1045, nbisL1-mrna-16079, nbisL1-mrna-23234 ... nbisL1-mrna-2382
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10841, nbisL1-mrna-20633, nbisL1-mrna-6235
Salicaceae	Populus euphratica	3	populus_peu29222, populus_peu30582, populus_peu34331
Solanaceae	Lycium barbarum	1	gene-LOC132631820
Solanaceae	Solanum pennellii	1	gene-LOC107015027
Tamaricaceae	Reaumuria soongarica	1	gene_4126
Tamaricaceae	Tamarix chinensis	1	TC05G0312