halophFGD

Basic Information

Locus ID: Ag11G03893

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: MADS-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	102428218	102444594	-	Ag11G03893

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.88	24,747.87 Da	72.37	78.69	-0.88

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00265	MADS_MEF2_like	5	74	4.06649E-40	IPR033896
Pfam	PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain)	12	59	3.8E-26	IPR002100
Pfam	PF01486	K-box region	88	174	1.5E-19	IPR002487
SUPERFAMILY	SSF55455	SRF-like	5	76	2.35E-31	IPR036879
Gene3D	G3DSA:3.40.1810.10	-	15	114	1.6E-27	IPR036879
SMART	SM00432	madsneu2	3	62	3.3E-41	IPR002100
ProSiteProfiles	PS51297	K-box domain profile.	92	183	12.658644	IPR002487
ProSiteProfiles	PS50066	MADS-box domain profile.	3	63	32.253624	IPR002100
ProSitePatterns	PS00350	MADS-box domain signature.	5	59	-	IPR002100
PRINTS	PR00404	MADS domain signature	5	25	1.6E-30	IPR002100
PRINTS	PR00404	MADS domain signature	40	61	1.6E-30	IPR002100
PRINTS	PR00404	MADS domain signature	25	40	1.6E-30	IPR002100
MobiDBLite	mobidb-lite	consensus disorder prediction	162	199	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	162	213	-	-
Coils	Coil	Coil	148	178	-	-
Coils	Coil	Coil	92	115	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription) GO:0045944 (positive regulation of transcription by RNA polymerase II)

Molecular Function:

GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding) GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0046983 (protein dimerization activity)

Cellular Component:

GO:0005634 (nucleus)

KEGG Pathway

KO Term:

K09260 (MADS-box transcription enhancer factor 2A)

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04022 (cGMP-PKG signaling pathway) map04022 (cGMP-PKG signaling pathway) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G22950.1	AGAMOUS-like 19. MADS-box protein AGL19
RefSeq	XP_017232041.1	PREDICTED: agamous-like MADS-box protein AGL19 [Daucus carota subsp. sativus]
Swiss-Prot	O82743	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1
TrEMBL	A0A5B7A7B6	Putative SOC1 OS=Davidia involucrata OX=16924 GN=Din_021625 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.696548	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.795173	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.448186	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	32.428436	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	23.97599	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.370352	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	26.037794	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	20.268053	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	36.732231	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.868223	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	31.015493	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	35.745197	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	32.634457	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	21.122547	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	27.025608	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	15.136721	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	20.168047	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	17.186775	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.616401		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.255627		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.872762		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	16.704088		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.236818		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	19.16264		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	20.47633		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	12.977065		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	15.636862		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	42.127548	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	53.902573	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	65.619499	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	99.887871	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	64.200928	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	53.829155	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	46.510593	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	112.096336	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	53.306217	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.089602	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.104091	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg10149, jg13374, jg14048, jg18452, jg1862, jg2350, jg29292 ... jg34008, jg37180, jg4859, jg7583, jg7584
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1379, gene_14801
Amaranthaceae	Atriplex hortensis	2	Ah003718, Ah023110
Amaranthaceae	Beta vulgaris	1	BVRB_5g101250
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg23664, Sbi_jg49303, Sbi_jg7513
Amaranthaceae	Salicornia europaea	2	Seu_jg12523, Seu_jg5810
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000344, GOSA_00001294
Amaranthaceae	Suaeda glauca	4	Sgl11207, Sgl16602, Sgl51869, Sgl57167
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006308, gene:ENSEOMG00000014504 ... gene:ENSEOMG00000020221, gene:ENSEOMG00000027535, gene:ENSEOMG00000034051, gene:ENSEOMG00000047148
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0005650, CQ.Regalona.r1.2BG0024000 ... CQ.Regalona.r1.5AG0008500, CQ.Regalona.r1.5BG0008750
Anacardiaceae	Pistacia vera	2	pistato.v30003470, pistato.v30011980
Apiaceae	Apium graveolens	6	Ag10G00252, Ag11G03893, Ag5G02767, Ag6G01639, Ag9G00532 ... Ag9G02402
Arecaceae	Cocos nucifera	7	COCNU_07G007820, COCNU_07G007840, COCNU_08G007880 ... COCNU_08G007890, COCNU_09G003370, COCNU_10G006160, COCNU_15G004990
Arecaceae	Phoenix dactylifera	5	gene-LOC103696089, gene-LOC103697443, gene-LOC103702697 ... gene-LOC103706417, gene-LOC103710691
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2369.V1.1, AsparagusV1_08.192.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G23769, Ftri15G21911, Ftri18G13582, Ftri3G09306 ... Ftri5G00137, Ftri9G28338
Brassicaceae	Arabidopsis thaliana	6	AT2G45660.1, AT4G11880.1, AT4G22950.1, AT5G51860.1 ... AT5G51870.3, AT5G62165.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10001632m.g.v1.0, Thhalv10004954m.g.v1.0 ... Thhalv10014716m.g.v1.0, Thhalv10015303m.g.v1.0, Thhalv10026205m.g.v1.0, Thhalv10027077m.g.v1.0, Thhalv10028949m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp2g25340.v2.2, Sp4g27700.v2.2, Sp6g05600.v2.2 ... Sp6g14110.v2.2, Sp6g14120.v2.2, Sp6g14130.v2.2, Sp7g21040.v2.2, Sp7g23460.v2.2
Brassicaceae	Brassica nigra	16	BniB01g001370.2N, BniB02g029370.2N, BniB02g075810.2N ... BniB02g080150.2N, BniB02g081860.2N, BniB03g012800.2N, BniB03g021460.2N, BniB04g002420.2N, BniB04g002690.2N, BniB05g011830.2N, BniB05g014200.2N, BniB06g004060.2N, BniB06g010470.2N, BniB08g029500.2N, BniB08g029770.2N, BniB08g049570.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2026, Ceq03G0484
Casuarinaceae	Casuarina glauca	3	Cgl01G2200, Cgl02G2131, Cgl03G0593
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g03110
Dunaliellaceae	Dunaliella salina	1	Dusal.0260s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g03720, gene.Thate08g07680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11257, nbisL1-mrna-1588, nbisL1-mrna-6116
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2227, evm.TU.LG01.2228, evm.TU.LG01.2229 ... evm.TU.LG01.2230, evm.TU.LG04.978, evm.TU.LG10.1320
Plantaginaceae	Plantago ovata	4	Pov_00016808, Pov_00029041, Pov_00032202, Pov_00033562
Plumbaginaceae	Limonium bicolor	4	Lb1G04390, Lb1G04391, Lb1G04439, Lb2G10497
Poaceae	Echinochloa crus-galli	8	AH01.3086, AH01.5123, AH07.168, BH01.3428, BH01.5088 ... BH01.5259, BH07.33, CH01.3674
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0098670, gene-QOZ80_2AG0115010 ... gene-QOZ80_2BG0152160, gene-QOZ80_2BG0168790, gene-QOZ80_3AG0231610, gene-QOZ80_3BG0296260
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0054220.1, HORVU.MOREX.r3.1HG0054230.1 ... HORVU.MOREX.r3.4HG0412460.1, HORVU.MOREX.r3.6HG0540820.1
Poaceae	Lolium multiflorum	5	gene-QYE76_012332, gene-QYE76_017633, gene-QYE76_019242 ... gene-QYE76_019257, gene-QYE76_071315
Poaceae	Oryza coarctata	8	Oco03G000240, Oco04G000240, Oco05G001340, Oco06G001300 ... Oco11G000450, Oco12G000350, Oco19G008950, Oco20G008820
Poaceae	Oryza sativa	4	LOC_Os02g01355.1, LOC_Os03g03070.1, LOC_Os06g01890.1 ... LOC_Os10g39130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G302600, gene-BS78_01G500700 ... gene-BS78_04G004400
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0100628, Pt_Chr0100645, Pt_Chr0200696, Pt_Chr0204710 ... Pt_Chr0503074, Pt_Chr0705413, Pt_Ctg00161
Poaceae	Sporobolus alterniflorus	9	Chr01G038570, Chr04G005950, Chr06G028760, Chr06G036350 ... Chr07G005660, Chr09G003640, Chr12G000820, Chr13G021300, Chr15G020020
Poaceae	Thinopyrum elongatum	8	Tel1E01G344500, Tel1E01G344800, Tel4E01G568600 ... Tel4E01G568700, Tel4E01G586900, Tel6E01G040900, Tel6E01G042600, Tel6E01G047500
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG030260, gene_TRIDC1AG030270 ... gene_TRIDC1BG035770, gene_TRIDC4BG058350, gene_TRIDC5AG073470, gene_TRIDC6AG001250
Poaceae	Triticum aestivum	12	TraesCS1A02G199600.2, TraesCS1A02G199900.1 ... TraesCS1B02G214500.1, TraesCS1B02G214600.1.cds1, TraesCS1D02G203300.2, TraesCS1D02G203400.1, TraesCS4B02G346700.1, TraesCS4D02G341700.1, TraesCS5A02G515500.1, TraesCS6A02G011700.1, TraesCS6B02G017900.1, TraesCS6D02G014600.1
Poaceae	Zea mays	3	Zm00001eb001670_P005, Zm00001eb393670_P002 ... Zm00001eb403750_P001
Poaceae	Zoysia japonica	6	nbis-gene-3104, nbis-gene-36177, nbis-gene-36179 ... nbis-gene-4697, nbis-gene-47065, nbis-gene-52305
Poaceae	Zoysia macrostachya	5	Zma_g12810, Zma_g14800, Zma_g15593, Zma_g2204, Zma_g4551
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.2786, evm.TU.LG04.2364, evm.TU.LG04.3456 ... evm.TU.LG10.274, evm.TU.LG16.130, evm.TU.LG17.268, evm.TU.LG19.1201
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g07470
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_11_RagTag.1315, evm.TU.Scaffold_4_RagTag.346 ... evm.TU.Scaffold_14_RagTag.255, evm.TU.Scaffold_16_RagTag.241, evm.TU.Scaffold_5_RagTag.341, evm.TU.Scaffold_9_RagTag.385
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-10913, nbisL1-mrna-18127, nbisL1-mrna-22484 ... nbisL1-mrna-29024
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10074, nbisL1-mrna-15726, nbisL1-mrna-1606 ... nbisL1-mrna-18560, nbisL1-mrna-7439
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12892, nbisL1-mrna-1960, nbisL1-mrna-20272 ... nbisL1-mrna-7119, nbisL1-mrna-8458
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.308, evm.TU.utg000006l.530 ... evm.TU.utg000007l.216, evm.TU.utg000008l.222, evm.TU.utg000010l.336, evm.TU.utg000022l.348
Rhizophoraceae	Kandelia obovata	6	Maker00000686, Maker00008916, Maker00009412, Maker00013628 ... Maker00014303, Maker00018317
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-16087, nbisL1-mrna-19490, nbisL1-mrna-19491 ... nbisL1-mrna-19492, nbisL1-mrna-22672, nbisL1-mrna-3489, nbisL1-mrna-6875, nbisL1-mrna-6876, nbisL1-mrna-9239
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-10828, nbisL1-mrna-12717, nbisL1-mrna-12718 ... nbisL1-mrna-12719, nbisL1-mrna-12721, nbisL1-mrna-12722, nbisL1-mrna-12723, nbisL1-mrna-12724, nbisL1-mrna-20643, nbisL1-mrna-6633, nbisL1-mrna-6973
Salicaceae	Populus euphratica	7	populus_peu03482, populus_peu27801, populus_peu28876 ... populus_peu30275, populus_peu30566, populus_peu31740, populus_peu34322
Solanaceae	Lycium barbarum	9	gene-LOC132603858, gene-LOC132631808, gene-LOC132633009 ... gene-LOC132634991, gene-LOC132639068, gene-LOC132645637, gene-LOC132645638, gene-LOC132645639, gene-LOC132645640
Solanaceae	Solanum chilense	6	SOLCI002559400, SOLCI002559500, SOLCI004080500 ... SOLCI004571300, SOLCI004797500, SOLCI007115800
Solanaceae	Solanum pennellii	7	gene-LOC107001949, gene-LOC107006635, gene-LOC107009850 ... gene-LOC107009862, gene-LOC107013793, gene-LOC107021365, gene-LOC107027318
Tamaricaceae	Reaumuria soongarica	6	STRG.29203_chr11_+, gene_11143, gene_14129, gene_15148 ... gene_485, gene_5190
Tamaricaceae	Tamarix chinensis	1	TC03G2728
Zosteraceae	Zostera marina	3	Zosma01g41420.v3.1, Zosma02g06390.v3.1, Zosma02g24860.v3.1