Basic Information
Locus ID:
Ag11G03846
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Myb-like protein L
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 93510854 | 93524881 | - | Ag11G03846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 107,850.10 Da | 52.69 | 67.80 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00167 | SANT | 520 | 562 | 3.64706E-7 | IPR001005 |
| CDD | cd00167 | SANT | 467 | 509 | 4.74747E-12 | IPR001005 |
| CDD | cd00167 | SANT | 572 | 615 | 7.40692E-11 | IPR001005 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 572 | 614 | 8.7E-14 | IPR017930 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 465 | 510 | 5.2E-13 | IPR017930 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 317 | 404 | 3.7E-6 | IPR017930 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 518 | 564 | 1.0E-10 | IPR017930 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 412 | 457 | 4.6E-8 | IPR017930 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 389 | 456 | 3.44E-15 | IPR009057 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 514 | 611 | 1.15E-25 | IPR009057 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 444 | 515 | 9.66E-20 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 464 | 517 | 5.7E-17 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 571 | 618 | 1.0E-13 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 411 | 459 | 1.0E-11 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 518 | 569 | 1.0E-15 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 309 | 410 | 1.4E-7 | - |
| SMART | SM00717 | sant | 411 | 461 | 1.4E-7 | IPR001005 |
| SMART | SM00717 | sant | 316 | 408 | 3.9E-5 | IPR001005 |
| SMART | SM00717 | sant | 517 | 566 | 1.8E-8 | IPR001005 |
| SMART | SM00717 | sant | 464 | 513 | 1.9E-14 | IPR001005 |
| SMART | SM00717 | sant | 569 | 617 | 5.3E-12 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 565 | 619 | 19.713078 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 565 | 615 | 10.278382 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 407 | 459 | 8.908119 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 460 | 511 | 11.218987 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 460 | 515 | 22.027103 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 513 | 564 | 9.755824 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 516 | 564 | 13.754447 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 312 | 406 | 7.549468 | IPR001005 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 783 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18100.4 | - | 0 |
| RefSeq | XP_017235844.1 | PREDICTED: uncharacterized protein LOC108209447 isoform X2 [Daucus carota subsp. sativus] | 0 |
| P34127 | Myb-like protein A OS=Dictyostelium discoideum OX=44689 GN=mybA PE=4 SV=2 | 0 | |
| TrEMBL | A0A161X1D4 | Myb-like DNA-binding domain protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005622 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.255928 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.151038 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.710561 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.248674 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.224285 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.042595 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.977281 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.500769 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.845799 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.829944 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.743004 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.112393 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.003225 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.923825 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.140405 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.479239 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.239697 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.500447 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.270819 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.638474 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.408349 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.069268 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.918178 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.998495 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.91277 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.007886 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.322877 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.392432 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.805568 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.175519 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.153041 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.097587 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.448268 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.362655 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.405137 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.684403 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.264955 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.18059 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.944695 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.129843 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.589537 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.119844 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.371966 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.294801 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.467793 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.03494 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.328249 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.912536 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.996221 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.369497 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27001 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19968 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002632 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2569, Sbi_jg60033, Sbi_jg60034, Sbi_jg60036 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24227 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00013051, GOSA_00013052, GOSA_00015253, GOSA_00015254 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78417, Sgl80926 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006359, gene:ENSEOMG00000006551 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0012960, CQ.Regalona.r1.5BG0013480 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30150230, pistato.v30150250, pistato.v30150280 |
| Apiaceae | Apium graveolens | 2 | Ag11G03846, Ag8G00209 |
| Arecaceae | Cocos nucifera | 4 | COCNU_14G008150, COCNU_14G008160, COCNU_14G008940 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709816, gene-LOC103721351 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.610.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G23282 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18100.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020020m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g16220.v2.2, Sp7g18220.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g046510.2N, BniB05g016770.2N, BniB05g016780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2864 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3012 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0179s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07960 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.266, evm.TU.LG10.267 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00033246, Pov_00040236 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15388 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.189, BH03.245, CH03.308 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0555170, gene-QOZ80_7BG0586270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0494820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042445 |
| Poaceae | Oryza coarctata | 2 | Oco13G001170, Oco14G001220 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g04700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G030500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200610 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001690, Chr28G000760 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G465700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG071500, gene_TRIDC5AG043630 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G503500.1, TraesCS5A02G291400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb299750_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13142, nbis-gene-51773 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5948 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2250, evm.TU.LG14.1423, evm.TU.LG20.1497 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19370, gene.Posoc06g21230 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60404.6, evm.TU.Scaffold_11_RagTag.643 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14299, nbisL1-mrna-28887 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4298 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12333 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008890 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-947 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8390 |
| Salicaceae | Populus euphratica | 1 | populus_peu28284 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633236 |
| Solanaceae | Solanum chilense | 1 | SOLCI000443000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015451 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17963, gene_3668 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1701 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32260.v3.1 |