Basic Information
Locus ID:
Ag11G03825
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 89425511 | 89428280 | - | Ag11G03825 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 41,136.04 Da | 44.19 | 89.00 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 70 | 348 | 4.24623E-91 | - |
| Pfam | PF00069 | Protein kinase domain | 66 | 343 | 2.1E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 46 | 345 | 6.31E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 36 | 149 | 5.9E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 150 | 358 | 1.1E-62 | - |
| PIRSF | PIRSF000654 | ILK | 14 | 357 | 1.6E-34 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 64 | 349 | 40.484737 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 70 | 98 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 194 | 206 | - | IPR008271 |
| Coils | Coil | Coil | 342 | 359 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47070.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017232045.1 | PREDICTED: probable receptor-like protein kinase At5g47070 [Daucus carota subsp. sativus] | 0 |
| Q9LTC0 | Probable serine/threonine-protein kinase PBL19 OS=Arabidopsis thaliana OX=3702 GN=PBL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166F8K9 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008313 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.758003 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.945449 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.289557 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.447212 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.207562 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.259675 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.354557 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.468198 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 53.759151 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 50.521778 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.803993 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.148947 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.780781 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.929619 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 38.990959 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 39.629093 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.893609 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 44.786968 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 36.06572 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 43.409412 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 55.150585 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.756433 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.454622 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.096087 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.496752 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.263968 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.357334 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.664523 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.504723 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.109713 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.559906 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.820877 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.012893 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.502313 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.993322 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.880855 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.639639 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.579648 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.239616 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.974833 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.628253 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 33.291061 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.163155 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 20.89397 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.249454 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 32.918411 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.284983 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 32.416084 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.115801 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.592995 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26759, jg29150, jg4922, jg7532 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1278, gene_14961 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004160, Ah023345 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24579, Sbi_jg29111, Sbi_jg3325, Sbi_jg8435 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11624, Seu_jg6609 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000133, GOSA_00010855 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11450, Sgl16829, Sgl51127, Sgl56433 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005329, gene:ENSEOMG00000014965 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0007750, CQ.Regalona.r1.5AG0003420 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30001280, pistato.v30141600 |
| Apiaceae | Apium graveolens | 5 | Ag11G03825, Ag1G00409, Ag5G01211, Ag6G00747, Ag7G00276 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G004540, COCNU_08G008420, COCNU_09G003750 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706360, gene-LOC103710766, gene-LOC103714048 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.353.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G21872, Ftri14G31824, Ftri5G31387, Ftri7G14319 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17660.1, AT5G47070.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000898m.g.v1.0, Thhalv10025174m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g11880.v2.2, Sp7g16480.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g063790.2N, BniB04g010480.2N, BniB04g015270.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0509, Ceq05G1013 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0599, Cgl05G1022 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g04170, gene.Cymno18g03380 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11349 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.27, evm.TU.LG10.1091 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00032431, Pov_00032637 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16343, Lb4G24233 |
| Poaceae | Echinochloa crus-galli | 11 | AH03.2730, AH06.2981, AH07.2824, AH09.1759, BH03.2873 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_2AG0139290, gene-QOZ80_2BG0194950 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0185240.1, HORVU.MOREX.r3.5HG0499340.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024073, gene-QYE76_035257, gene-QYE76_045288 |
| Poaceae | Oryza coarctata | 8 | Oco03G016780, Oco07G011970, Oco08G011670, Oco11G017240 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os02g43430.1, LOC_Os04g45920.1, LOC_Os06g50100.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G254400, gene-BS78_04G214000 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0201633, Pt_Chr0207501, Pt_Chr0301854, Pt_Chr0400885 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr10G014100, Chr10G022110, Chr11G000410, Chr11G008170 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G670600, Tel5E01G512500, Tel6E01G455600 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC2AG056220, gene_TRIDC2BG059260 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS2B02G408700.1, TraesCS2D02G388000.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb075040_P001, Zm00001eb103540_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22424, nbis-gene-49564, nbis-gene-5443 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g16775, Zma_g21720, Zma_g30008, Zma_g31143, Zma_g32204 |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG04.1022, evm.TU.LG04.3140, evm.TU.LG10.820 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g05770 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.457, evm.TU.Scaffold_7_RagTag.272 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17901, nbisL1-mrna-19457 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17543, nbisL1-mrna-3835 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7018, nbisL1-mrna-8276 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.104, evm.TU.utg000028l.164 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00010729, Maker00018558 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16204, nbisL1-mrna-8870 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10649, nbisL1-mrna-20209 |
| Salicaceae | Populus euphratica | 2 | populus_peu03094, populus_peu33969 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635208, gene-LOC132645837 |
| Solanaceae | Solanum chilense | 1 | SOLCI001873100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007799, gene-LOC107026695 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.23838_chr05_+, gene_14031, gene_14032 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3721, TC09G0322 |
| Zosteraceae | Zostera marina | 2 | Zosma02g06010.v3.1, Zosma06g05680.v3.1 |