Basic Information
Locus ID:
Ag11G03770
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Guanine nucleotide-binding protein subunit beta-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 81705845 | 81708132 | + | Ag11G03770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 35,870.12 Da | 27.82 | 87.03 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 7 | 325 | 4.92546E-85 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 261 | 3.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 137 | 179 | 4.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 99 | 133 | 3.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 91 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 325 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 186 | 221 | 1.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 326 | 1.67E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 327 | 7.2E-135 | IPR015943 |
| SMART | SM00320 | WD40_4 | 224 | 261 | 0.058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 94 | 133 | 2.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 52 | 91 | 3.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 221 | 3.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 179 | 4.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 326 | 0.064 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 294 | 327 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 11 | 45 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 188 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 101 | 133 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 182 | 11.154684 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 59 | 95 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 302 | 327 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 59 | 100 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 101 | 133 | 12.446495 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 189 | 222 | 12.393768 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 189 | 230 | 15.755108 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 166 | 180 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 78 | 92 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 208 | 222 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 208 | 222 | 1.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 120 | 134 | 1.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 166 | 180 | 1.2E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18080.1 | Transducin/WD40 repeat-like superfamily protein. Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. | 0 |
| RefSeq | XP_017219461.1 | PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Daucus carota subsp. sativus] | 0 |
| P93340 | Small ribosomal subunit protein RACK1 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164U1E3 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025380 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.334494 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.185558 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.824939 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.618593 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.845584 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.649645 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.022945 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.507561 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 73.784241 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 70.011742 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 77.550842 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 86.263435 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 95.500847 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 97.506149 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 30.764587 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 43.938572 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 36.572277 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 28.926294 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 40.944767 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 63.404942 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 55.823566 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 65.808937 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 73.877869 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 64.203445 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 68.094902 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 34.258839 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 31.434187 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 47.172348 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 40.507912 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 37.095047 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 47.52948 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 48.826923 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 99.580566 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 82.678108 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 111.076752 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 96.624443 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 58.768291 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 74.004616 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 47.843464 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 39.945736 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.100895 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 71.761116 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 35.414345 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 56.07748 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.947071 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 86.615021 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 28.258144 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 58.413872 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 51.558971 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 46.432926 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13319, jg13320, jg27000 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19983, gene_23890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002270 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g111970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg32204, Sbi_jg57196 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24934 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022192 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53978, Sgl59303 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004264, gene:ENSEOMG00000021259 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0014830, CQ.Regalona.r1.5BG0015800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150310 |
| Apiaceae | Apium graveolens | 2 | Ag11G03770, Ag5G00067 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G005670, COCNU_02G005690, COCNU_06G008140 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103716866, gene-LOC103719002, gene-LOC103722987 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3204.V1.1, AsparagusV1_05.750.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G23993, Ftri6G09016 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18080.1, AT1G48630.1, AT3G18130.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10008183m.g.v1.0, Thhalv10011646m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g16100.v2.2, Sp1g35600.v2.2, Sp3g16240.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g046490.2N, BniB03g007440.2N, BniB03g027900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3013 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g02150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0241s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.268 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00018619, Pov_00033244, Pov_00033291 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G16516, Lb3G16524, Lb5G29571, Lb6G29907 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2797, AH05.1476, BH02.2881, BH05.1645, CH02.3653 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0029020, gene-QOZ80_1BG0079240 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0084340.1, HORVU.MOREX.r3.3HG0280990.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015641, gene-QYE76_054631 |
| Poaceae | Oryza coarctata | 4 | Oco01G017580, Oco02G017820, Oco09G016160, Oco10G015950 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g49290.1, LOC_Os05g47890.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G234800, gene-BS78_09G227600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0503641, Pt_Chr0602392, Pt_Chr0602403 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G015230, Chr02G012360, Chr03G013770, Chr05G021280 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G615800, Tel3E01G441700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG055510, gene_TRIDC1BG063850 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G378000.1, TraesCS1B02G398800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb294990_P001, Zm00001eb342960_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12605, nbis-gene-13743, nbis-gene-24932 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10901, Zma_g10902, Zma_g27334, Zma_g28749, Zma_g8453 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2251, evm.TU.LG05.754, evm.TU.LG14.1424 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19330, gene.Posoc04g03680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60404.5, evm.TU.Scaffold_11_RagTag.642 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14300, nbisL1-mrna-28642 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3231, nbisL1-mrna-4299 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12332, nbisL1-mrna-1651 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.4 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000606, Maker00008692 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14440, nbisL1-mrna-948 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19212, nbisL1-mrna-8389 |
| Salicaceae | Populus euphratica | 2 | populus_peu28285, populus_peu29736 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599878, gene-LOC132633235 |
| Solanaceae | Solanum chilense | 2 | SOLCI000423000, SOLCI006758900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007696, gene-LOC107014559, gene-LOC107023263 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12652 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1040, TC09G1699 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05450.v3.1, Zosma05g32250.v3.1 |