Basic Information
Locus ID:
Ag11G03745
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 77618839 | 77622063 | + | Ag11G03745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 33,299.19 Da | 49.20 | 79.69 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57997 | Tropomyosin | 29 | 223 | 1.16E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 265 | - | - |
| Coils | Coil | Coil | 39 | 66 | - | - |
| Coils | Coil | Coil | 74 | 115 | - | - |
| Coils | Coil | Coil | 189 | 230 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09060.1 | 0 | |
| RefSeq | XP_017232348.1 | PREDICTED: centlein-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166CWY9 | Coiled-coil domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005285 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.250649 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.470014 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.073974 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.68742 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.855193 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.172419 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.329564 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.794515 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.885525 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.707487 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.038631 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.537783 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.997128 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.584065 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.372302 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.96352 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.548204 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.699278 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.405402 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.592473 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.380899 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.257836 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.438117 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.881065 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.668519 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.710782 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.388608 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.704111 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.588487 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.193216 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.262047 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.373388 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.464965 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.159008 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.199065 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.060249 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.05254 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.748851 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.152479 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.487976 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.250454 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.580315 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.321321 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.549551 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.244501 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10797, jg6138 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1459 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023798 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g008390, BVRB_3g060290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29386, Sbi_jg3609 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6350 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000810 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11992, Sgl15968 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012732, gene:ENSEOMG00000033614 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0014620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041420 |
| Apiaceae | Apium graveolens | 1 | Ag11G03745 |
| Arecaceae | Cocos nucifera | 3 | COCNU_09G005900, COCNU_09G005910, scaffold014438G000030 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103717588, gene-LOC103723692, gene-LOC113463167 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1066.V1.1, AsparagusV1_09.1396.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16790 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G14680.1, AT4G09060.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008342m.g.v1.0, Thhalv10028816m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13060.v2.2, Sp6g08460.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g009620.2N, BniB06g039990.2N, BniB08g035130.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0120, Ceq03G2201 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2344 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g04760, gene.Cymno10g08730 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g13490, gene.Thate08g16810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2086 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1544 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037206 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15400 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.4048, BH07.3863, CH07.3929, Contig1910.3 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151660, gene-QOZ80_2BG0207030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0633800.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G026260, Oco04G026680 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G330100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105639, Pt_Chr0105665 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G026970, Chr13G000170, Chr13G000180 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G787800, Tel4E01G138000, Tel4E01G138100 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG007730, gene_TRIDC2AG072590 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1D02G008100.1, TraesCS6B02G466400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb259540_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38873 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17485 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1835, evm.TU.LG06.529 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g10420, gene.Posoc02g11620, gene.Posoc06g16000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.962, evm.TU.Scaffold_8_RagTag.778 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18968, nbisL1-mrna-9457 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13317, nbisL1-mrna-18038 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20506, nbisL1-mrna-6793 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.732, evm.TU.utg000018l.499 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003719, Maker00010590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3007, nbisL1-mrna-8236 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20287, nbisL1-mrna-9980 |
| Salicaceae | Populus euphratica | 1 | populus_peu32221 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132620184, gene-LOC132627575 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016011 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15702, gene_8662 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2958, TC09G1096 |
| Zosteraceae | Zostera marina | 2 | Zosma03g28080.v3.1, Zosma05g23210.v3.1 |