halophFGD

Basic Information

Locus ID: Ag11G03730

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the class-I aminoacyl-tRNA synthetase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	76753018	76761519	+	Ag11G03730

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.93	84,774.81 Da	38.19	90.14	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00579	tRNA synthetases class I (W and Y)	41	331	4.0E-41	IPR002305
Pfam	PF00579	tRNA synthetases class I (W and Y)	426	717	2.5E-59	IPR002305
SUPERFAMILY	SSF52374	Nucleotidylyl transferase	381	728	5.06E-67	-
SUPERFAMILY	SSF52374	Nucleotidylyl transferase	4	342	6.26E-52	-
Gene3D	G3DSA:3.40.50.620	HUPs	391	556	3.3E-62	IPR014729
Gene3D	G3DSA:3.40.50.620	HUPs	152	355	1.0E-70	IPR014729
Gene3D	G3DSA:3.40.50.620	HUPs	557	741	3.2E-75	IPR014729
Gene3D	G3DSA:3.40.50.620	HUPs	19	128	1.5E-30	IPR014729

Gene Ontology

Biological Process:

GO:0006418 (tRNA aminoacylation for protein translation)

Molecular Function:

GO:0000166 (nucleotide binding) GO:0004812 (aminoacyl-tRNA ligase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K01866 (tyrosyl-tRNA synthetase [EC:6.1.1.1])

Pathway:

ko00970 (Aminoacyl-tRNA biosynthesis) map00970 (Aminoacyl-tRNA biosynthesis)

Reaction:

R02918 (ATP + L-Tyrosine + tRNA(Tyr) <=> AMP + Diphosphate + L-Tyrosyl-tRNA(Tyr))

Best hit

Source	Best Hit ID	Description
TAIR	AT1G28350.1	Nucleotidylyl transferase superfamily protein.
RefSeq	XP_017247128.1	PREDICTED: tyrosine--tRNA ligase 2, cytoplasmic [Daucus carota subsp. sativus]
Swiss-Prot	F4HWL4	Tyrosine--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At1g28350 PE=1 SV=1
TrEMBL	A0A165YZ03	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013227 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	43.231243	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	31.812025	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	27.171761	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	27.38394	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	29.451281	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	25.600567	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	27.66716	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	26.100977	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	59.810528	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	62.569187	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	69.012032	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	68.2967	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	68.228027	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	52.443825	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	22.752129	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	31.600309	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	27.211439	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	37.711926	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	29.307638	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	38.558296	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	38.918571	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	33.278984	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	37.029709	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	38.281559	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	32.78146	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	40.95089	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	35.334148	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	35.07431	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	44.815205	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.065764		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.442283		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.213034		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	10.4412		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.3296		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	13.919188		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.136603		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.214334		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.763657		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	38.924541	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	22.956406	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	22.217714	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	26.89916	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	36.439728	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	83.529068	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	74.066566	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	32.622112	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	64.013557	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	37.869564	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	40.274616	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	34.531933	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg19205, jg21239
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14741, gene_15235
Amaranthaceae	Atriplex hortensis	1	Ah023527
Amaranthaceae	Beta vulgaris	1	BVRB_7g162780
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg27676, Sbi_jg32642, Sbi_jg62751
Amaranthaceae	Salicornia europaea	2	Seu_jg24088, Seu_jg7655
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00028003
Amaranthaceae	Suaeda glauca	2	Sgl71615, Sgl75185
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000015473, gene:ENSEOMG00000036941 ... gene:ENSEOMG00000048654
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.1BG0016500
Anacardiaceae	Pistacia vera	2	pistato.v30165970, pistato.v30242440
Apiaceae	Apium graveolens	1	Ag11G03730
Arecaceae	Cocos nucifera	1	COCNU_07G005420
Arecaceae	Phoenix dactylifera	1	gene-LOC103716533
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1705.V1.1, AsparagusV1_08.308.V1.1 ... AsparagusV1_08.345.V1.1
Asteraceae	Flaveria trinervia	2	Ftri14G14889, Ftri15G11369
Brassicaceae	Arabidopsis thaliana	2	AT1G28350.1, AT2G33840.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10016782m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g24590.v2.2
Brassicaceae	Brassica nigra	2	BniB03g017090.2N, BniB03g033210.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq05G0781, Ceq05G0783, Ceq05G0787, Ceq05G0788, Ceq05G0791
Casuarinaceae	Casuarina glauca	2	Cgl05G0791, Cgl05G0797
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno12g04140
Dunaliellaceae	Dunaliella salina	1	Dusal.0469s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g10410
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-667
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.1981
Plantaginaceae	Plantago ovata	2	Pov_00000060, Pov_00040225
Plumbaginaceae	Limonium bicolor	2	Lb2G09254, Lb2G09273
Poaceae	Echinochloa crus-galli	8	AH01.78, AH08.302, BH01.845, BH02.3292, BH08.304, CH01.3100 ... CH07.3149, CH08.380
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0143650, gene-QOZ80_2BG0199000 ... gene-QOZ80_2BG0199030, gene-QOZ80_3BG0279760, gene-QOZ80_7AG0571930, gene-QOZ80_8AG0617240, gene-QOZ80_8BG0644860, gene-QOZ80_9AG0691250, gene-QOZ80_9BG0717520
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0701140.1
Poaceae	Lolium multiflorum	42	gene-QYE76_005729, gene-QYE76_007565, gene-QYE76_007572 ... gene-QYE76_021139, gene-QYE76_024967, gene-QYE76_032499, gene-QYE76_032529, gene-QYE76_043805, gene-QYE76_043806, gene-QYE76_043807, gene-QYE76_043808, gene-QYE76_050563, gene-QYE76_056566, gene-QYE76_056577, gene-QYE76_056624, gene-QYE76_056648, gene-QYE76_056649, gene-QYE76_056651, gene-QYE76_056652, gene-QYE76_056653, gene-QYE76_056654, gene-QYE76_056655, gene-QYE76_056656, gene-QYE76_056657, gene-QYE76_056658, gene-QYE76_056659, gene-QYE76_056660, gene-QYE76_056661, gene-QYE76_056662, gene-QYE76_056663, gene-QYE76_056664, gene-QYE76_056665, gene-QYE76_056667, gene-QYE76_056668, gene-QYE76_056669, gene-QYE76_058455, gene-QYE76_059068, gene-QYE76_061188, gene-QYE76_061190, gene-QYE76_061191, gene-QYE76_061193, gene-QYE76_061197
Poaceae	Oryza coarctata	6	Oco15G001990, Oco15G003710, Oco15G006050, Oco16G002050 ... Oco16G003630, Oco16G005900
Poaceae	Oryza sativa	5	LOC_Os04g58400.1, LOC_Os07g47860.1, LOC_Os08g05490.1 ... LOC_Os08g09260.1, LOC_Os08g23110.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G257000, gene-BS78_07G043300 ... gene-BS78_07G198500
Poaceae	Puccinellia tenuiflora	15	Pt_Chr0104654, Pt_Chr0104958, Pt_Chr0105394, Pt_Chr0105395 ... Pt_Chr0105477, Pt_Chr0105478, Pt_Chr0106995, Pt_Chr0202267, Pt_Chr0203391, Pt_Chr0204832, Pt_Chr0204833, Pt_Chr0304476, Pt_Chr0305639, Pt_Chr0405594, Pt_Chr0703515
Poaceae	Sporobolus alterniflorus	5	Chr06G003520, Chr16G001110, Chr17G001050, Chr20G010690 ... Chr29G011650
Poaceae	Thinopyrum elongatum	5	Tel1E01G530400, Tel6E01G347900, Tel6E01G520800 ... Tel6E01G766200, Tel7E01G524800
Poaceae	Triticum dicoccoides	9	gene_TRIDC5AG041010, gene_TRIDC5BG043460 ... gene_TRIDC6AG025260, gene_TRIDC6AG060720, gene_TRIDC6BG031480, gene_TRIDC6BG051180, gene_TRIDC6BG072560, gene_TRIDC7AG042550, gene_TRIDC7BG033670
Poaceae	Triticum aestivum	12	TraesCS5A02G198600.1, TraesCS5A02G270800.1 ... TraesCS6A02G413600.1, TraesCS6B02G109700.1, TraesCS6B02G204800.1, TraesCS6B02G313700.1, TraesCS6B02G462900.1, TraesCS7A02G087100.1.cds1, TraesCS7A02G304700.1, TraesCS7B02G205000.2, TraesCS7D02G081600.1.cds1, TraesCS7D02G300200.1
Poaceae	Zea mays	2	Zm00001eb172860_P001, Zm00001eb416340_P002
Poaceae	Zoysia japonica	4	nbis-gene-39112, nbis-gene-45835, nbis-gene-45837 ... nbis-gene-45935
Poaceae	Zoysia macrostachya	1	Zma_g22460
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.602, evm.TU.LG26.429
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g02350
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.1394, evm.TU.Scaffold_9_RagTag.1275
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11911, nbisL1-mrna-20893
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-8464, nbisL1-mrna-8716
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11065, nbisL1-mrna-21260
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.785, evm.TU.utg000006l.815
Rhizophoraceae	Kandelia obovata	2	Maker00009375, Maker00013434
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10340, nbisL1-mrna-10341, nbisL1-mrna-1269
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-4800
Salicaceae	Populus euphratica	2	populus_peu06000, populus_peu19861
Solanaceae	Lycium barbarum	1	gene-LOC132599145
Solanaceae	Solanum chilense	1	SOLCI003001500
Solanaceae	Solanum pennellii	1	gene-LOC107008204
Tamaricaceae	Reaumuria soongarica	3	MSTRG.3982_chr02_+, gene_1267, gene_13912
Tamaricaceae	Tamarix chinensis	1	TC01G4284
Zosteraceae	Zostera marina	1	Zosma05g00470.v3.1