Basic Information
Locus ID:
Ag11G03714
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
CRAL/TRIO, N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 76306451 | 76311316 | + | Ag11G03714 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 38,425.65 Da | 45.81 | 88.55 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00170 | SEC14 | 91 | 241 | 1.99742E-26 | IPR001251 |
| Pfam | PF00650 | CRAL/TRIO domain | 87 | 241 | 3.0E-21 | IPR001251 |
| SUPERFAMILY | SSF46938 | CRAL/TRIO N-terminal domain | 6 | 74 | 1.12E-11 | IPR036273 |
| SUPERFAMILY | SSF52087 | CRAL/TRIO domain | 81 | 242 | 1.83E-36 | IPR036865 |
| Gene3D | G3DSA:3.40.525.10 | - | 5 | 277 | 4.6E-51 | IPR036865 |
| SMART | SM01100 | CRAL_TRIO_N_2 | 35 | 60 | 1.3E-4 | IPR011074 |
| SMART | SM00516 | sec14_4 | 86 | 247 | 2.6E-31 | IPR001251 |
| ProSiteProfiles | PS50191 | CRAL-TRIO lipid binding domain profile. | 79 | 239 | 18.615206 | IPR001251 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55840.1 | Sec14p-like phosphatidylinositol transfer family protein. | 0 |
| RefSeq | XP_017244049.1 | PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9-like [Daucus carota subsp. sativus] | 0 |
| Q75DK1 | SEC14 cytosolic factor OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SEC14 PE=3 SV=2 | 0 | |
| TrEMBL | A0A165YYG4 | CRAL-TRIO domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013245 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 40.680134 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 40.608822 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.130116 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 33.127029 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 32.612709 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.143158 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.398409 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.460137 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 48.37822 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 43.816566 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 51.913742 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 47.52087 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.006145 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 37.067295 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 56.213139 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 52.375919 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 63.891327 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 54.15654 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 37.586731 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 45.392426 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 49.426273 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 53.065956 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 49.199562 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 51.502987 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 62.154503 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 59.643101 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 54.868607 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 46.146999 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 53.642715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.706271 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.247734 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.810482 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.556459 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 37.949219 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.204491 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.868767 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 20.77704 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 20.954403 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 23.585148 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.010935 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 17.575764 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 41.168324 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.501331 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.186449 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 28.211229 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 35.447037 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 35.48291 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 54.496574 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 52.277683 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 49.380676 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg20510, jg21619, jg24620, jg24734, jg38441 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21936, gene_7119 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009114 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g090890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18574, Sbi_jg36985 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4844 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017291 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23606, Sgl28814 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008458, gene:ENSEOMG00000029234 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000450, CQ.Regalona.r1.4BG0026460 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30066050, pistato.v30066520, pistato.v30152660 ... |
| Apiaceae | Apium graveolens | 2 | Ag11G03714, Ag2G01715 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G006420 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702384, gene-LOC103712851, gene-LOC120108480 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3588.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G14213, Ftri11G25070, Ftri12G08728, Ftri15G06489 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55840.1, AT5G47730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000957m.g.v1.0, Thhalv10011652m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41430.v2.2, Sp2g12430.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g064300.2N, BniB04g010050.2N, BniB04g014940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1501, Ceq02G1412 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1664, Cgl02G1457 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g04270, gene.Cymno06g10020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-3599, nbisL1-mrna-7760, nbisL1-mrna-9030 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2054, evm.TU.LG12.1287 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00037938, Pov_00039153 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11876, Lb4G22960 |
| Poaceae | Echinochloa crus-galli | 9 | AH03.1356, AH06.2253, AH07.739, BH03.1470, BH06.1994 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0105290, gene-QOZ80_2BG0158770 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0470200.1, HORVU.MOREX.r3.6HG0572180.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004116, gene-QYE76_021375, gene-QYE76_059322 |
| Poaceae | Oryza coarctata | 5 | Oco03G004680, Oco04G005220, Oco11G012580, Oco17G001230 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g10650.1, LOC_Os06g40510.1, LOC_Os09g08390.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G076800, gene-BS78_10G187200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202107, Pt_Chr0204775, Pt_Chr0705106 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G033010, Chr0G005830, Chr10G003560, Chr11G004860 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G288700, Tel6E01G325400, Tel7E01G642500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG027920, gene_TRIDC5BG029260 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS5A02G170000.1, TraesCS5B02G166800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb094480_P002, Zm00001eb205810_P003 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-10065, nbis-gene-28703, nbis-gene-33457 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g12399, Zma_g29731, Zma_g30797, Zma_g31928, Zma_g33048 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.Contig9.4, evm.TU.LG01.316, evm.TU.LG04.438 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g15040, gene.Posoc03g08540 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.1439, evm.TU.Scaffold_8_RagTag.1654 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-20052, nbisL1-mrna-20241, nbisL1-mrna-8803 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10958, nbisL1-mrna-554, nbisL1-mrna-7174 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13381, nbisL1-mrna-15047, nbisL1-mrna-17950 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.224, evm.TU.utg000018l.31 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002910, Maker00003629, Maker00011752 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-3230, nbisL1-mrna-9076, nbisL1-mrna-9372 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11268, nbisL1-mrna-12118, nbisL1-mrna-23750 |
| Salicaceae | Populus euphratica | 4 | populus_peu00883, populus_peu10469, populus_peu10510 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615996, gene-LOC132619246 |
| Solanaceae | Solanum chilense | 1 | SOLCI002744800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002991, gene-LOC107026528 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.31797_chr09_-, STRG.6944_chr04_+, gene_16632 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2588, TC06G0526, TC07G1689 |
| Zosteraceae | Zostera marina | 1 | Zosma03g18380.v3.1 |