Basic Information
Locus ID:
Ag11G03702
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
AI-2E family transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 76015826 | 76018921 | - | Ag11G03702 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 72,180.46 Da | 40.23 | 106.31 | 0.36 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55960.1 | 0 | |
| RefSeq | XP_017247886.1 | PREDICTED: uncharacterized protein LOC108219111 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165YY95 | Transmembrane protein C9orf5 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013253 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.762051 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.877092 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.291504 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.829853 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.821333 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.615141 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.108085 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.682735 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.117748 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 38.350658 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.737556 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.692379 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.244122 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.921993 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 36.198204 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 35.586651 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 45.957474 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.850178 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 53.219425 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 36.766712 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 45.750614 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 50.281807 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 51.894295 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 44.991474 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 45.101273 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 66.913086 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 57.471504 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 49.994907 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 50.226692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.451764 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.796587 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 18.029047 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.947353 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.213499 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 30.141848 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.581415 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.226622 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 15.954242 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.861913 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.889818 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 17.890837 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.263561 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 68.783958 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 54.183487 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.762867 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.714602 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 84.350281 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.286547 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.200214 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.561384 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20201, jg21631 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12119, gene_12120 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009105 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g090790, BVRB_4g090800 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18561, Sbi_jg36971 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4832 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017299, GOSA_00017300 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23597, Sgl23598, Sgl28805, Sgl28806 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010448, gene:ENSEOMG00000043892 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0000550, CQ.Regalona.r1.2BG0000560 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151880, pistato.v30152110 |
| Apiaceae | Apium graveolens | 1 | Ag11G03702 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G013670, scaffold015097G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697170, gene-LOC103716785 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.45.V1.1, AsparagusV1_01.531.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G10509, Ftri16G18836, Ftri7G20581 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G55960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012921m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g17810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g034690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1676 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04370 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0402s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17440 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10331, nbisL1-mrna-9023 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037955 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37498, Lb0G38013, Lb4G25301, Lb4G25303 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1207, BH06.1256, CH06.1389 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0517900, gene-QOZ80_6BG0469940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0673550.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G007700, Oco12G007730 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g19390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G124000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404334, Pt_Chr0404368 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G001200, Chr11G017570, Chr14G006950, Chr21G005370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G395800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG027650, gene_TRIDC7BG018400 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G218400.1, TraesCS7B02G125300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb380950_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-45606, nbis-gene-52628 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29529, Zma_g31769 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.313, evm.TU.LG02.621, evm.TU.LG02.622 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g08790 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1932, evm.TU.Scaffold_6_RagTag.117 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8813 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9364 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-104, nbisL1-mrna-15041 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.85, evm.TU.utg000018l.26 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003308 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11891, nbisL1-mrna-9368 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17477, nbisL1-mrna-23744 |
| Salicaceae | Populus euphratica | 1 | populus_peu00872 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132617253, gene-LOC132627840, gene-LOC132637710 |
| Solanaceae | Solanum chilense | 2 | SOLCI000499700, SOLCI007039000 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107006962, gene-LOC107010790, gene-LOC107026311 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31815_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2575, TC06G0539, TC06G0540 |
| Zosteraceae | Zostera marina | 2 | Zosma03g09130.v3.1, Zosma05g21990.v3.1 |