Basic Information
Locus ID:
Ag11G03680
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 70747913 | 70753362 | - | Ag11G03680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.97 | 22,694.80 Da | 68.28 | 32.28 | -1.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 174 | - | - |
| Coils | Coil | Coil | 62 | 82 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59800.1 | 0 | |
| RefSeq | XP_017235403.1 | PREDICTED: protein FAM133 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A830DKS8 | Protein FAM133-like OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002881700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.563954 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.873182 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.263773 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.273246 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.680098 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.822666 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.370964 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.41169 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 46.490284 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 45.219437 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.136436 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 48.328072 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 44.998463 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.120678 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.109325 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.566132 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 30.01667 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.478081 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 27.337889 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.451942 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.694555 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.946814 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.586636 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 35.838436 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 38.155178 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.878107 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 27.532276 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.446413 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.790581 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.472175 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.449091 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.754433 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.297062 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.360698 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.340418 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.245216 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.887839 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.455739 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.189138 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.9145 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.493286 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.84309 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.102036 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 61.845436 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 66.12973 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 35.784985 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 48.131763 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 41.912788 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 52.214561 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 56.505505 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15765 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019633 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g058870 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38482, Sbi_jg6586 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15339 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006436 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl07045 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012033, gene:ENSEOMG00000029428 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0011070, CQ.Regalona.r1.3BG0011290 |
| Anacardiaceae | Pistacia vera | 7 | pistato.v30111880, pistato.v30247470, pistato.v30247500 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G03680 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G012380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708592 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.496.V1.1, AsparagusV1_09.514.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G20379 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43795.2, AT3G59800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006256m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g25870.v2.2, Sp5g03340.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB03g056530.2N, BniB03g056590.2N, BniB05g054940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0310 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0312 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g02360, gene.Cymno04g17100 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0165s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12112, nbisL1-mrna-4296 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.511 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025103 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33588 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1435, BH09.1616, CH09.1800 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0312050, gene-QOZ80_4BG0343380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178440.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G009640, Oco08G009440 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g41920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G147600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302246, Pt_Chr0302284 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G009710, Chr25G009970, Chr26G010040, Chr30G009760 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G611800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG051130 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G353200.1, TraesCS2B02G371100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb078530_P006, Zm00001eb412540_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36978, nbis-gene-5160 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19980, Zma_g21541 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1515, evm.TU.LG11.879 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g05380, gene.Posoc07g13590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1549 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18245 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2766 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.299 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001829 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5402 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12920 |
| Salicaceae | Populus euphratica | 2 | populus_peu22498, populus_peu23883 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636063 |
| Solanaceae | Solanum chilense | 1 | SOLCI004186600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007680 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14316_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1849 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26140.v3.1 |