Basic Information
Locus ID:
Ag11G03650
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 66120446 | 66121469 | - | Ag11G03650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 17,918.14 Da | 64.39 | 86.39 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23110.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_017221913.1 | PREDICTED: sacsin [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YQQ4 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026901 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.127892 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.316188 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.614123 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.125037 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.689265 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.51286 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.847017 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.331234 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.083615 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.169095 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.34032 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.154843 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.166158 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.355232 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.120211 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.085257 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.531089 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.604478 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.300934 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.228378 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.162135 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.323606 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.117923 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.576776 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.742442 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.563887 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.549549 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.742892 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.173417 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.037894 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.18642 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15519, jg15520, jg15521 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20517 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038501 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g203060, BVRB_9g203070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14723, Sbi_jg55498 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26052 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012539 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78101, Sgl80607 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016231, gene:ENSEOMG00000036445 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0021330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224850 |
| Apiaceae | Apium graveolens | 3 | Ag11G03650, Ag5G01576, Ag8G01977 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G006590 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716924 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2273.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G28303, Ftri8G30209 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003499m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g24010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g076400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0597 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0588 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05360 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0723s00002.v1.0, Dusal.0723s00003.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11685 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.937 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005418 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34375 |
| Poaceae | Echinochloa crus-galli | 3 | BH09.2932, BH09.2933, CH09.3142 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299580, gene-QOZ80_4BG0330270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047432 |
| Poaceae | Oryza coarctata | 2 | Oco07G019130, Oco08G018390 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G282200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300164 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001020, Chr23G001030, Chr26G018260 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G1014600, Tel2E01G951100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG077140, gene_TRIDC2BG085010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G556200.1, TraesCS2B02G571400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066370_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6183 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22214 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1450, evm.TU.LG21.1147 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g10530 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.445 |
| Salicaceae | Populus euphratica | 4 | populus_peu13938, populus_peu13939, populus_peu13940 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622327 |
| Solanaceae | Solanum chilense | 1 | SOLCI004514600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010837 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6590 |
| Tamaricaceae | Tamarix chinensis | 4 | TC07G0888, TC07G0889, TC07G0890, TC07G0891 |
| Zosteraceae | Zostera marina | 1 | Zosma01g21600.v3.1 |