Basic Information
Locus ID:
Ag11G03632
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
CDKE-1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 62829473 | 62838342 | + | Ag11G03632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 52,225.39 Da | 42.91 | 84.90 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07842 | STKc_CDK8_like | 18 | 326 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 18 | 326 | 1.4E-70 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 13 | 327 | 7.69E-88 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 99 | 341 | 5.6E-72 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 6 | 98 | 3.2E-23 | - |
| SMART | SM00220 | serkin_6 | 18 | 326 | 5.5E-93 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 18 | 326 | 46.915707 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 24 | 49 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 143 | 155 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 465 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63610.1 | cyclin-dependent kinase E;1. significant sequence similarity to plant and animal cyclin-dependent protein kinases, and was classified as an E-type CDK with a SPTAIRE cyclin binding motif in the kinase domain. | 0 |
| RefSeq | XP_017258418.1 | PREDICTED: cyclin-dependent kinase E-1 [Daucus carota subsp. sativus] | 0 |
| Q84TI6 | Cyclin-dependent kinase E-1 OS=Arabidopsis thaliana OX=3702 GN=CDKE-1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A161ZUF8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022245 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.902637 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.173534 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.528084 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 26.442429 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.903915 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.971601 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.977583 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 29.757673 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.161499 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.749134 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.540127 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.50491 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.772659 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 33.268173 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.88416 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.965338 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.382656 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.781054 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.049683 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.627432 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.376168 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.786003 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.514599 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.996395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.104214 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.421337 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.51895 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.012564 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.242083 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.076541 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.002538 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.605155 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 32.50457 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.95702 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.101765 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.063492 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.141224 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.101261 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 21.650679 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.579567 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.288768 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.204922 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 24.541637 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 34.224083 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 34.70261 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.535723 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.358805 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.677462 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.541988 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 29.005611 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39692 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10314 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005497 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17711, Sbi_jg62383 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg955 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007276 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23972, Sgl29151 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011106, gene:ENSEOMG00000028570 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005900, CQ.Regalona.r1.4BG0006060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30133970 |
| Apiaceae | Apium graveolens | 1 | Ag11G03632 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G015260 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703848, gene-LOC103714524, gene-LOC120107158 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.931.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G32861 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004142m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g042440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1666 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1726 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06970 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15750 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1574 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014108 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06391, Lb2G13825, Lb5G27579 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2746, BH01.3078, CH01.3301 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0118640, gene-QOZ80_2BG0172390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012990 |
| Poaceae | Oryza coarctata | 2 | Oco19G011280, Oco20G011150 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g42950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G270000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503438, Pt_Chr0503484 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021600, Chr09G006520, Chr13G018180, Chr15G017580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G342100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030070, gene_TRIDC1BG035570 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G198100.2, TraesCS1B02G212800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb225020_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38209 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15783 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1469, evm.TU.LG20.410 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.55 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22305 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4348 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20428 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.257 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014460 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18194 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6788 |
| Salicaceae | Populus euphratica | 2 | populus_peu03721, populus_peu34565 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618278 |
| Solanaceae | Solanum chilense | 1 | SOLCI000730400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007258 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11966 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2189 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00770.v3.1 |