Basic Information
Locus ID:
Ag11G03622
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 60965951 | 60975906 | + | Ag11G03622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 44,907.75 Da | 53.50 | 50.54 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 12 | 57 | 2.29989E-8 | - |
| Pfam | PF13639 | Ring finger domain | 12 | 57 | 2.0E-6 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 59 | 1.94E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 64 | 1.4E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 12 | 56 | 2.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 12 | 57 | 11.81064 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 408 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05545.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017258241.1 | PREDICTED: uncharacterized protein LOC108227548 [Daucus carota subsp. sativus] | 0 |
| Q5Z8R1 | E3 ubiquitin-protein ligase IPI1 OS=Oryza sativa subsp. japonica OX=39947 GN=IPI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZRY3 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022143 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.496687 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.128393 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.777242 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.907549 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.990317 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.597344 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.613475 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.343504 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.316305 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.860689 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.475536 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.157528 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.907171 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.585367 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.456382 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.993289 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.126461 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.764957 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.856773 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.965499 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.095695 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.68335 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.624017 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.814868 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.827214 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.737432 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.013413 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.738356 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.374558 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.011467 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.484698 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.7172 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.852379 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.802644 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.701849 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.99939 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.400927 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.025439 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.068635 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.901278 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.079935 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.510186 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.922191 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.347742 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.873395 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.325376 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.056751 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.899456 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.750849 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.473873 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26555, jg28242, jg29946 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10400, gene_6347 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah005728, Ah025269, Ah029519 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g075870 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1360, Sbi_jg17160, Sbi_jg35221, Sbi_jg61769 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3368, Seu_jg421 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003547, GOSA_00015356 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24460, Sgl29634, Sgl73698, Sgl77193 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005637, gene:ENSEOMG00000009841 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0008000, CQ.Regalona.r1.4BG0008150 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30009140, pistato.v30082160, pistato.v30082390 |
| Apiaceae | Apium graveolens | 3 | Ag11G03622, Ag7G01587, Ag9G02244 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G001800 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103715081, gene-LOC103719724, gene-LOC120105563 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2124.V1.1, AsparagusV1_08.3170.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G12407, Ftri15G18254 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G15260.1, AT2G47700.1, AT3G05545.1, AT4G13490.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001505m.g.v1.0, Thhalv10020788m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g04390.v2.2, Sp4g29640.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g058070.2N, BniB02g011930.2N, BniB07g032870.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G0955, Ceq06G1167, Ceq09G1134 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl06G0981, Cgl06G1218, Cgl09G1232 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g06130, gene.Cymno18g01240 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g31200, gene.Thate07g09240 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8237 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2479, evm.TU.LG04.348 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007229, Pov_00039253 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06660, Lb4G21490 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1654, AH05.1028, BH02.1669, BH05.1077, CH02.1854 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0016280, gene-QOZ80_1BG0065150 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0023230.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_009698, gene-QYE76_010107, gene-QYE76_052915 |
| Poaceae | Oryza coarctata | 4 | Oco01G009950, Oco02G010350, Oco09G002580, Oco10G002670 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g24880.1, LOC_Os05g06270.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G154900, gene-BS78_09G055600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403541, Pt_Chr0501943, Pt_Chr0603558 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G012170, Chr02G019130, Chr05G014580, Chr08G007990 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G205000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG016950, gene_TRIDC1BG017930 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G095100.1, TraesCS1B02G123100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb131520_P001, Zm00001eb282730_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18159, nbis-gene-23437, nbis-gene-6399 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10306, Zma_g26454, Zma_g27720 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.130, evm.TU.LG03.830, evm.TU.LG04.622 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g08200, gene.Posoc07g11590 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.110, evm.TU.Scaffold_2_RagTag.2067 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2732, nbisL1-mrna-2844, nbisL1-mrna-8168 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14204, nbisL1-mrna-5142 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13675, nbisL1-mrna-5191 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.50, evm.TU.utg000012l.77 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005029, Maker00011250 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12989, nbisL1-mrna-7882 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16145, nbisL1-mrna-98 |
| Salicaceae | Populus euphratica | 2 | populus_peu13354, populus_peu15685 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621417, gene-LOC132645971 |
| Solanaceae | Solanum chilense | 1 | SOLCI004614700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006215 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32726_chr09_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1416, TC02G0812 |
| Zosteraceae | Zostera marina | 3 | Zosma01g33420.v3.1, Zosma02g18400.v3.1, Zosma06g30670.v3.1 |