Basic Information
Locus ID:
Ag11G03600
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 57799400 | 57807577 | - | Ag11G03600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 110,528.62 Da | 58.12 | 84.33 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01399 | PCI domain | 373 | 509 | 7.5E-20 | IPR000717 |
| Gene3D | G3DSA:1.25.40.860 | - | 355 | 493 | 3.2E-33 | - |
| Gene3D | G3DSA:1.25.40.860 | - | 268 | 345 | 2.0E-21 | - |
| Gene3D | G3DSA:4.10.860.10 | UVR domain | 217 | 267 | 2.2E-24 | - |
| SMART | SM00088 | PINT_4 | 441 | 532 | 3.1E-6 | IPR000717 |
| SMART | SM00753 | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | 3.1E-6 | - |
| ProSiteProfiles | PS50250 | PCI domain profile. | 316 | 513 | 16.762936 | IPR000717 |
| Hamap | MF_03000 | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 928 | 26.887634 | IPR027512 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 857 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 948 | - | - |
| Coils | Coil | Coil | 93 | 113 | - | - |
| Coils | Coil | Coil | 566 | 611 | - | - |
| Coils | Coil | Coil | 667 | 694 | - | - |
| Coils | Coil | Coil | 799 | 856 | - | - |
| Coils | Coil | Coil | 615 | 649 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11420.1 | eukaryotic translation initiation factor 3A. Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. | 0 |
| RefSeq | XP_017258200.1 | PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Daucus carota subsp. sativus] | 0 |
| Q9LD55 | Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana OX=3702 GN=TIF3A1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XCW1 | Eukaryotic translation initiation factor 3 subunit A OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022132 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 42.764206 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 27.188299 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.404747 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.609772 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.116739 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.148201 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 27.88768 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.33013 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 52.758816 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 52.570488 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 53.592503 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 55.082424 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 50.806393 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 46.993103 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.851251 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.090216 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.795473 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.777609 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.245417 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.265476 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 31.356524 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 35.089127 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.508057 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 39.090721 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 37.803913 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 35.00378 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 27.367655 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 31.271029 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.433575 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.551849 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.762531 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 18.234892 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 19.013277 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.566811 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.419321 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.967684 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 15.960491 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.611626 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 46.464577 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.085432 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.414641 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 43.514156 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 43.767475 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 112.773743 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 75.389679 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 45.783676 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 60.393726 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 33.877872 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 38.146557 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 34.047932 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16861, jg26542 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10384, gene_8377 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000755, Ah024601 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g076280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17204, Sbi_jg61808 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg463 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015389 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24426, Sgl29601 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000011829, gene:ENSEOMG00000013177 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0015440, CQ.Regalona.r1.1BG0010550 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30081840 |
| Apiaceae | Apium graveolens | 3 | Ag11G03600, Ag3G01383, Ag3G01961 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G002930, COCNU_12G003410 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703468, gene-LOC103720979 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1856.V1.1, AsparagusV1_04.908.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G28393 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G11420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10026980m.g.v1.0, Thhalv10028395m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g080400.2N, BniB05g057140.2N, BniB08g036550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1141, Ceq08G1192 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1188, Cgl08G1225 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g00950 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0995s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g02580, gene.Thate02g02590, gene.Thate03g17660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8254, nbisL1-mrna-8255 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG03.2501, evm.TU.LG03.2502, evm.TU.LG07.452 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002164, Pov_00039735 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G07108, Lb6G31685, Lb7G33334, Lb7G33335, Lb7G33342 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1209, BH02.881, CH02.1009 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007620, gene-QOZ80_1BG0056390 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0224450.1, HORVU.MOREX.r3.7HG0646350.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031437, gene-QYE76_049285 |
| Poaceae | Oryza coarctata | 2 | Oco01G000820, Oco02G000890 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G084000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203543, Pt_Chr0205441, Pt_Chr0306673 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G024690, Chr03G003230, Chr05G002540, Chr08G001790 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G045700, Tel5E01G100000, Tel7E01G151100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG000570, gene_TRIDC3BG003320 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS3A02G025500.1, TraesCS3B02G019500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb121480_P002, Zm00001eb337210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7106 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9868 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.835, evm.TU.LG08.836, evm.TU.LG22.1088 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g18080, gene.Posoc04g00260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.85 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8191 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5162 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5171 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.62 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011346 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7896 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-76 |
| Salicaceae | Populus euphratica | 3 | populus_peu13323, populus_peu15642, populus_peu15643 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607057, gene-LOC132630267 |
| Solanaceae | Solanum chilense | 2 | SOLCI003893900, SOLCI004221500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002579, gene-LOC107030958 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31399_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2478, TC09G1887 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01990.v3.1 |