Basic Information
Locus ID:
Ag11G03570
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 50689759 | 50694944 | - | Ag11G03570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 37,357.56 Da | 52.13 | 83.44 | -0.83 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19980.1 | cytomatrix protein-related. | 0 |
| RefSeq | XP_017255930.1 | PREDICTED: CAP-Gly domain-containing linker protein 1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164V023 | Cytomatrix family protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023016 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.625216 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.973119 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.049261 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.488362 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.328987 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.422997 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.627428 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.515208 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.970045 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.181952 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.77191 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.695641 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.427136 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.34299 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.093804 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.32685 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.517293 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.490464 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.947947 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.018536 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.711701 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.974234 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.195742 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.128001 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.142083 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.215518 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.21853 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.100182 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.771718 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.843224 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.517767 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.800891 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.237791 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.565236 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.435874 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.941365 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.484063 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.063883 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.676519 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.617557 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.443683 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.527198 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.846881 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.052666 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.472447 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.355282 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.451712 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.355233 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.676516 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.609375 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11775, jg22963 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8461 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036272 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40055, Sbi_jg55383 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014028 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl00253, Sgl05306, Sgl05781, Sgl12210, Sgl17582, Sgl23688 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000018313, gene:ENSEOMG00000020225 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0019340, CQ.Regalona.r1.1BG0003680 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049350 |
| Apiaceae | Apium graveolens | 1 | Ag11G03570 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001780, COCNU_10G001260 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701489, gene-LOC103703867, gene-LOC120103805 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.381.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G09565, Ftri1G06661 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008122m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17770.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB02g005260.2N, BniB03g008480.2N, BniB03g028890.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0883 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0961 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g04950 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g19960, gene.Thate01g24080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1766 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.703 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002560 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32137 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.325, BH02.354, CH02.391 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0327470 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0096400.2, HORVU.MOREX.r3.2HG0096420.1 |
| Poaceae | Lolium multiflorum | 11 | gene-QYE76_007096, gene-QYE76_019617, gene-QYE76_019618 ... |
| Poaceae | Oryza coarctata | 3 | Oco07G000820, Oco07G000830, Oco08G000490 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g02680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G032200 |
| Poaceae | Puccinellia tenuiflora | 12 | Pt_Chr0100854, Pt_Chr0100859, Pt_Chr0107973, Pt_Chr0107976 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G018350, Chr25G016350, Chr26G001460, Chr30G015010 |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G610700, Tel2E01G025500, Tel2E01G026300 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG055030, gene_TRIDC1BG062990 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS1A02G374100.1, TraesCS1B02G393900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb121210_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37440, nbis-gene-53541 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19255, Zma_g20833 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG08.2, evm.TU.LG12.1674, evm.TU.LG13.1117 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g12250 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_17_RagTag.2, evm.TU.Scaffold_7_RagTag.432 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18991, nbisL1-mrna-9071 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11561, nbisL1-mrna-6177 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13040 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.487, evm.TU.utg000018l.383 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003604, Maker00011719 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13377, nbisL1-mrna-8753 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11091 |
| Salicaceae | Populus euphratica | 2 | populus_peu15351, populus_peu32996 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628120 |
| Solanaceae | Solanum chilense | 1 | SOLCI004448700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016258 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31269_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2862 |
| Zosteraceae | Zostera marina | 2 | Zosma01g10720.v3.1, Zosma04g23050.v3.1 |