Basic Information
Locus ID:
Ag11G03551
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 46628368 | 46634931 | + | Ag11G03551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 71,528.92 Da | 49.75 | 104.27 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 270 | 312 | 5.27913E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 475 | 513 | 5.8E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 267 | 335 | 7.6E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 392 | 431 | 1.3E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 264 | 340 | 1.59E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 365 | 638 | 1.22E-44 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 25 | 135 | 2.4E-5 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 266 | 339 | 1.7E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 354 | 499 | 2.9E-29 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 501 | 641 | 7.4E-21 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 269 | 332 | 4.2E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 474 | 514 | 0.28 | IPR000225 |
| SMART | SM00185 | arm_5 | 392 | 432 | 5.8E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 515 | 555 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 556 | 596 | 210.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 403 | 440 | 13.8774 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 485 | 527 | 9.1174 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 265 | 339 | 40.35585 | IPR003613 |
| Coils | Coil | Coil | 141 | 161 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42340.1 | Plant U-Box 15. | 0 |
| RefSeq | XP_017256097.1 | PREDICTED: U-box domain-containing protein 15 [Daucus carota subsp. sativus] | 0 |
| Q681N2 | U-box domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=PUB15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A161ZQ42 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022935 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.369641 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.101452 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.177066 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.362986 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.111403 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.256169 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.049467 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.244569 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.118145 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.233661 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.032136 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.824081 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.261468 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.13453 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.076546 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.377428 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.73653 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.309789 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28936, jg6053 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8357 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035914 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg39867 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14462 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014228 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12349, Sgl12350, Sgl17631 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019174, gene:ENSEOMG00000032697 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0001260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30048370, pistato.v30108840 |
| Apiaceae | Apium graveolens | 1 | Ag11G03551 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005270 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701164, gene-LOC103723151 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G27100, Ftri5G04838 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003163m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08220.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0744, Ceq07G1828 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0840, Cgl07G1994 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07720 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.83, evm.TU.LG08.419 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007303, Pov_00037443 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21251 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.3032, AH08.1860, BH06.2817, BH08.1941, CH08.2129 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0551340, gene-QOZ80_6BG0504920 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0691600.1, HORVU.MOREX.r3.7HG0751570.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_031045 |
| Poaceae | Oryza coarctata | 4 | Oco11G017620, Oco12G017860, Oco15G012460, Oco16G010130 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g51130.1, LOC_Os08g37570.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G169900, gene-BS78_10G262800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0207170, Pt_Chr0401843, Pt_Chr0401844, Pt_Chr0403291 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G007310, Chr10G022430, Chr11G000020, Chr20G003770 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G497300, Tel7E01G956700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG040490, gene_TRIDC7AG076340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G293900.1, TraesCS7A02G549700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb033520_P001, Zm00001eb228550_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17275, nbis-gene-9525 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24264, Zma_g31170 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.298 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14920 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7648 |
| Salicaceae | Populus euphratica | 3 | populus_peu08432, populus_peu33118, populus_peu36919 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628207 |
| Solanaceae | Solanum chilense | 2 | SOLCI004761100, SOLCI005554800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005669, gene-LOC107017315 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23650.v3.1 |