Basic Information
Locus ID:
Ag11G03512
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Multiple chloroplast division site 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 32292946 | 32295840 | - | Ag11G03512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 39,377.37 Da | 41.19 | 76.16 | -0.65 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20830.1 | multiple chloroplast division site 1. Encodes MCD1 (MULTIPLE CHLOROPLAST DIVISION SITE 1). Determines the site of chloroplast division in concert with MinD (AT5G24020). | 0 |
| RefSeq | XP_017257902.1 | PREDICTED: protein MULTIPLE CHLOROPLAST DIVISION SITE 1 [Daucus carota subsp. sativus] | 0 |
| Q8GWA7 | Protein MULTIPLE CHLOROPLAST DIVISION SITE 1 OS=Arabidopsis thaliana OX=3702 GN=MCD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164V0T3 | MLO-like protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022990 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 31.739405 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.315985 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.826311 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.299463 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.646482 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.700556 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.714418 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.86694 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.663322 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.368422 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.307852 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.710182 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.428377 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.803125 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.065886 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.830671 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.745049 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 28.062799 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 33.885841 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.401524 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.860146 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.389071 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.905094 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.156321 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.886244 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.218019 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.594721 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 28.914738 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.420294 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.098829 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 26.48052 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.35907 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.241506 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.637041 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.693876 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.404799 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.904183 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.505938 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 35.787003 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.214428 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 25.844311 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.646498 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.924953 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.755409 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 27.165062 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 25.034904 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.998106 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 38.471676 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 34.366234 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 35.496666 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6030 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8327 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39801, Sbi_jg55146 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14542 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013072 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12415, Sgl17678 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018020, gene:ENSEOMG00000035932 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023530, CQ.Regalona.r1.1BG0000710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048070 |
| Apiaceae | Apium graveolens | 1 | Ag11G03512 |
| Arecaceae | Cocos nucifera | 1 | scaffold005325G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704934 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G20451 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G20830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007995m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g18530.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g028930.2N, BniB01g034750.2N, BniB03g008810.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1398 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1530 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07360 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g17030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.44 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023153 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12366 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2078, BH09.2232, CH09.2375 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0306200 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0196150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045808 |
| Poaceae | Oryza coarctata | 2 | Oco07G014150, Oco08G013660 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G199800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301608, Pt_Chr0306597 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G005520, Chr25G004630, Chr26G014010, Chr30G004480 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G773000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065070, gene_TRIDC2BG069470 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G455800.1, TraesCS2B02G477800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb072780_P001, Zm00001eb428100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5668 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21855 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.477, evm.TU.LG12.1239 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g27800, gene.Posoc06g15430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.359 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18905 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7287 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6934 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.840 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010365 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8800 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20121 |
| Salicaceae | Populus euphratica | 2 | populus_peu15515, populus_peu33146 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636046 |
| Solanaceae | Solanum chilense | 1 | SOLCI006266600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029010 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15891 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1137 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23280.v3.1 |