halophFGD

Basic Information

Locus ID: Ag11G03458

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	23875216	23879754	+	Ag11G03458

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.35	32,189.28 Da	49.07	86.79	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14137	STKc_GSK3	83	237	1.53094E-117	IPR039192
Pfam	PF00069	Protein kinase domain	87	234	1.7E-28	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	88	240	1.43E-43	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	79	277	6.2E-60	-
SMART	SM00220	serkin_6	66	234	4.8E-10	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	234	19.86323	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K03083 (glycogen synthase kinase 3 beta [EC:2.7.11.26])

Pathway:

ko01521 (EGFR tyrosine kinase inhibitor resistance) map01521 (EGFR tyrosine kinase inhibitor resistance) ko04012 (ErbB signaling pathway) map04012 (ErbB signaling pathway) ko04062 (Chemokine signaling pathway) map04062 (Chemokine signaling pathway) ko04110 (Cell cycle) map04110 (Cell cycle) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04550 (Signaling pathways regulating pluripotency of stem cells) map04550 (Signaling pathways regulating pluripotency of stem cells) map04657 (IL-17 signaling pathway) map04660 (T cell receptor signaling pathway) map04662 (B cell receptor signaling pathway) ko04711 (Circadian rhythm - fly) map04711 (Circadian rhythm - fly) ko04916 (Melanogenesis) map04916 (Melanogenesis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G30980.1	SHAGGY-related protein kinase dZeta. Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.
RefSeq	XP_027111978.1	shaggy-related protein kinase eta isoform X3 [Coffea arabica]
Swiss-Prot	Q39010	Shaggy-related protein kinase zeta OS=Arabidopsis thaliana OX=3702 GN=ASK6 PE=1 SV=2
TrEMBL	A0A6P6W962	non-specific serine/threonine protein kinase OS=Coffea arabica OX=13443 GN=LOC113731102 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	25.049192	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	20.827419	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	14.758377	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	16.270601	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	17.515951	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.173755	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.688584	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.914345	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	41.87793	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	43.3013	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	43.813519	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	35.870117	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	36.715878	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	33.394066	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	14.908281	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	20.984364	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	20.755732	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	28.801367	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	21.108883	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	19.278269	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	27.215919	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	31.730556	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	34.543831	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	34.049381	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.572847	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	39.133835	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	30.395144	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	26.298782	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	36.732197	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.6124		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	13.867307		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	11.994234		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	59.489292		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	30.288986		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	74.283386		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	21.072405		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	14.70784		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	16.684519		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	16.477615	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	13.88427	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.084978	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.641488	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.411613	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.13839	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	18.887276	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.625585	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	16.958122	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	24.933908	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	29.328568	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	27.324732	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg20647
Apiaceae	Apium graveolens	1	Ag11G03458
Arecaceae	Phoenix dactylifera	1	gene-LOC103698143
Poaceae	Zoysia japonica	2	nbis-gene-10262, nbis-gene-57386