Basic Information
Locus ID:
Ag11G03441
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the adaptor complexes small subunit family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 19712301 | 19720603 | - | Ag11G03441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 18,724.59 Da | 40.58 | 103.54 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14831 | AP1_sigma | 3 | 145 | 5.0805E-101 | IPR044733 |
| Pfam | PF01217 | Clathrin adaptor complex small chain | 1 | 140 | 3.7E-55 | IPR022775 |
| SUPERFAMILY | SSF64356 | SNARE-like | 1 | 139 | 3.52E-48 | IPR011012 |
| Gene3D | G3DSA:3.30.450.60 | - | 1 | 156 | 4.2E-66 | - |
| PIRSF | PIRSF015588 | AP_complex_sigma | 1 | 152 | 1.2E-67 | IPR016635 |
| ProSitePatterns | PS00989 | Clathrin adaptor complexes small chain signature. | 57 | 67 | - | IPR000804 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35410.2 | Clathrin adaptor complex small chain family protein. | 0 |
| RefSeq | XP_017238021.1 | PREDICTED: AP-1 complex subunit sigma-2 [Daucus carota subsp. sativus] | 0 |
| O23685 | AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J4Z7R4 | AP complex subunit sigma OS=Nyssa sinensis OX=561372 GN=F0562_017882 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 79.423157 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 63.484314 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 72.25766 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 75.312141 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 60.808475 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 70.908966 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 63.292328 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 49.802952 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 90.186058 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 93.123322 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 95.627235 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 100.477882 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 99.043335 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 86.347603 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 165.120834 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 135.83873 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 155.292908 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 113.691521 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 115.852928 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 123.413147 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 113.88633 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 173.539993 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 189.46022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 171.133362 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 163.07724 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 108.962929 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 123.115929 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 86.396088 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 130.964218 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 56.950462 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 47.473156 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 45.223194 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 51.016598 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 71.717087 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 54.296696 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 60.380928 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 53.179413 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 52.530476 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 41.244984 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 29.151918 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 23.046482 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 135.705536 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 126.808243 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 155.901199 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 141.49968 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 151.507309 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 134.559357 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 166.677277 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 149.334183 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 125.492607 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6009 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12509, gene_21779 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009899 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11176, Sbi_jg46152 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20491 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005460 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55720, Sgl60934 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016368, gene:ENSEOMG00000037563 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004830, CQ.Regalona.r1.9AG0019790 |
| Anacardiaceae | Pistacia vera | 19 | pistato.v30047710, pistato.v30104150, pistato.v30104520 ... |
| Apiaceae | Apium graveolens | 3 | Ag11G03441, Ag3G00592, Ag4G02145 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G001970, COCNU_12G002800 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103719714, gene-LOC103719765, gene-LOC103721677 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1541.V1.1, AsparagusV1_08.3182.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G19430, Ftri3G03274, Ftri7G19848 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G17380.1, AT4G35410.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022887m.g.v1.0, Thhalv10026443m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g30690.v2.2, Sp7g33190.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g065210.2N, BniB05g002990.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq09G0012, Ceq09G0013 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl09G0013, Cgl09G0015, Cgl09G0017 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g07310, gene.Cymno10g00430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0118s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g05640, gene.Thate05g07840, gene.Thate08g24430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5725 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.12, evm.TU.LG08.474 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037518 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18143, Lb3G19267 |
| Poaceae | Echinochloa crus-galli | 3 | BH07.3999, CH01.247, CH06.2257 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0211080, gene-QOZ80_3AG0213610 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0516240.1 |
| Poaceae | Oryza coarctata | 3 | Oco05G025280, Oco05G026930, Oco06G026170 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57040.1, LOC_Os03g59660.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G037400, gene-BS78_01G059600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0105254, Pt_Chr0105265, Pt_Chr0201032 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr01G001970, Chr01G003500, Chr04G029960, Chr04G031160 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G661900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG061020, gene_TRIDC5BG065120 |
| Poaceae | Triticum aestivum | 2 | TraesCS5B02G423600.1, TraesCS5D02G430000.1 |
| Poaceae | Zea mays | 3 | Zm00001eb059770_P001, Zm00001eb062120_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15258 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2633, Zma_g347 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1541, evm.TU.LG08.880, evm.TU.LG09.343 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g16440, gene.Posoc06g00990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.1008 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15070 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21874, nbisL1-mrna-3172 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000013l.564, evm.TU.utg000016l.4 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004425, Maker00016796 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10960, nbisL1-mrna-4563 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22534, nbisL1-mrna-23063 |
| Salicaceae | Populus euphratica | 2 | populus_peu27748, populus_peu29743 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614722 |
| Solanaceae | Solanum chilense | 1 | SOLCI001589700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003002 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11607_chr02_-, gene_16892 |
| Zosteraceae | Zostera marina | 2 | Zosma01g04450.v3.1, Zosma05g22490.v3.1 |