Basic Information
Locus ID:
Ag11G03435
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat MAX2 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 18989452 | 18992080 | + | Ag11G03435 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 81,843.00 Da | 44.72 | 96.94 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 13 | 50 | 1.3E-10 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 69 | 451 | 3.45E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 50 | 335 | 5.1E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 342 | 481 | 1.9E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 49 | 7.9E-12 | - |
| SMART | SM00367 | LRR_CC_2 | 218 | 249 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 351 | 376 | 0.52 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 377 | 402 | 25.0 | IPR006553 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42620.1 | RNI-like superfamily protein. The mutations at MAX2 cause increased hypocotyl and petiole elongation in light-grown seedlings. Positional cloning identifies MAX2 as a member of the F-box leucine-rich repeat family of proteins. MAX2 is identical to ORE9, a proposed regulator of leaf senescence. Involved in positive regulation of light responses. | 0 |
| RefSeq | XP_017259024.1 | PREDICTED: F-box/LRR-repeat MAX2 homolog A [Daucus carota subsp. sativus] | 0 |
| I1SSI5 | F-box protein MAX2 homolog A OS=Petunia hybrida OX=4102 GN=MAX2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A164W6C3 | F-box_5 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021294 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.646202 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.179535 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.295441 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.01597 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.319709 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.909283 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.533924 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.000227 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 44.754269 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 49.672562 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 45.203579 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.157814 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 33.046001 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.946823 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.887546 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.518818 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.954069 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.511022 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.164109 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.611116 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.474369 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.475955 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.927488 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.950372 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.305697 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.043389 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.303556 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.040622 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.930067 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.362319 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.913212 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.02404 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 24.919973 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.300612 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.397848 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.290228 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.098547 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.618588 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.732563 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.330448 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.316182 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.513825 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.645303 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 29.741171 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.559032 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.798378 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.140322 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.885919 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.797059 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.373162 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19300, jg24374 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25987 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011764 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12036, Sbi_jg46957 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21250 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009589 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80440, Sgl82901 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005004, gene:ENSEOMG00000039045 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7BG0019970 |
| Apiaceae | Apium graveolens | 1 | Ag11G03435 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G002530, COCNU_06G005670 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706894, gene-LOC103723039, gene-LOC103723052 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1303.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G24605 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G42620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017925m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g003320.2N, BniB06g001650.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1285, Ceq02G2863 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl02G1323, Cgl02G1326, Cgl02G1328, Cgl02G2978 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g16310, gene.Cymno09g01880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g18080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-3436, nbisL1-mrna-3437, nbisL1-mrna-6791 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1707, evm.TU.LG12.819 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004636 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.290, BH06.400, CH06.390 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509320, gene-QOZ80_6BG0461450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0652790.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027969 |
| Poaceae | Oryza coarctata | 2 | Oco11G002580, Oco12G002580 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06050.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G046500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402159 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G015440, Chr11G022700, Chr14G001990, Chr21G001100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G221800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG012870, gene_TRIDC7BG001090 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G110500.1.cds1, TraesCS7B02G008400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb270950_P001, Zm00001eb376660_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34743 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31373 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2151, evm.TU.LG23.387 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g28200, gene.Posoc08g03100, gene.Posoc08g10080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1157 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11740, nbisL1-mrna-21015, nbisL1-mrna-30776 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15208, nbisL1-mrna-8623 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11185, nbisL1-mrna-18663 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.268, add.evm.TU.utg000006l.289 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009550 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17251 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4907 |
| Salicaceae | Populus euphratica | 2 | populus_peu18049, populus_peu27121 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636581 |
| Solanaceae | Solanum chilense | 2 | SOLCI002808700, SOLCI003719600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007259, gene-LOC107026050 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14382_chr08_-, gene_12487 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1798 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36370.v3.1 |