Basic Information
Locus ID:
Ag11G03379
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
PORA
Description:
protochlorophyllide
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 13337086 | 13339519 | + | Ag11G03379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 43,160.77 Da | 33.65 | 83.90 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09810 | LPOR_like_SDR_c_like | 84 | 396 | 0.0 | - |
| Pfam | PF00106 | short chain dehydrogenase | 87 | 229 | 1.6E-18 | IPR002347 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 81 | 365 | 4.35E-39 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 75 | 397 | 4.2E-58 | - |
| TIGRFAM | TIGR01289 | LPOR: light-dependent protochlorophyllide reductase | 83 | 397 | 1.4E-177 | IPR005979 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 161 | 172 | 1.3E-7 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 294 | 311 | 1.3E-7 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 86 | 103 | 1.3E-7 | IPR002347 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27440.1 | protochlorophyllide oxidoreductase B. light-dependent NADPH:protochlorophyllide oxidoreductase B | 0 |
| RefSeq | XP_017259018.1 | PREDICTED: protochlorophyllide reductase [Daucus carota subsp. sativus] | 0 |
| Q9SDT1 | Protochlorophyllide reductase, chloroplastic OS=Daucus carota OX=4039 GN=POR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161YEU7 | NADPH-protochlorophyllide oxidoreductase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021236 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 38.661507 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 28.084665 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.506329 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.870823 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.495192 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.32526 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.77352 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.189016 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 174.742767 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 167.733337 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 174.773483 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 151.16156 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 148.817673 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 162.452728 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 77.933456 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 105.435097 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 108.148567 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 222.74472 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 292.479767 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 176.584274 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 164.29744 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 105.460403 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 108.103569 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 120.560364 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 147.203384 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 226.315033 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 194.096329 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 276.570862 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 199.948883 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 169.187622 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 342.239105 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 300.54718 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 193.861145 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 124.987106 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 220.596863 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 231.920609 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 248.295563 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 198.18428 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 175.904785 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 184.468002 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 128.716034 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.715926 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 40.215252 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 63.160168 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 75.803711 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.033808 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 67.932861 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 92.08651 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 56.565269 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 69.185333 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24227 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12440, gene_25861 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008206, Ah037312 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g087610, BVRB_9g208630 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11843, Sbi_jg18713, Sbi_jg37153, Sbi_jg46568 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21075, Seu_jg4975 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006919, GOSA_00021008 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23057, Sgl28171, Sgl80177, Sgl82626 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010826, gene:ENSEOMG00000016523 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0020130, CQ.Regalona.r1.4BG0020820 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30019630 |
| Apiaceae | Apium graveolens | 2 | Ag11G03379, Ag3G00358 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696187 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3330.V1.1, AsparagusV1_04.3331.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G00743, Ftri18G23473, Ftri3G06824 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G03630.1, AT4G27440.1, AT5G54190.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007802m.g.v1.0, Thhalv10025367m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g02540.v2.2, Sp6g16250.v2.2, Sp7g25390.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g082950.2N, BniB03g000570.2N, BniB05g009950.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1089, Ceq02G2587 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1266, Cgl02G2670 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01730 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0059s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g08850, gene.Thate08g23230, gene.Thate08g23240 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1066 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1883, evm.TU.LG05.1644 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004509, Pov_00009068 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.1708, AH09.2717, BH01.1909, BH09.2958, CH01.2015 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0241450, gene-QOZ80_3BG0286660 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0047060.1, HORVU.MOREX.r3.2HG0209470.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011814, gene-QYE76_047553 |
| Poaceae | Oryza coarctata | 4 | Oco07G019350, Oco08G018620, Oco19G007040, Oco20G007010 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g58200.1, LOC_Os10g35370.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G188400, gene-BS78_02G359500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307121 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029790, Chr12G009730, Chr23G000800, Chr26G018490 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G306100, Tel2E01G966000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG026050, gene_TRIDC1BG030950 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G171000.1, TraesCS1B02G186300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb044650_P001, Zm00001eb066060_P003 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2225, nbis-gene-3860, nbis-gene-6205 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1619, Zma_g22234, Zma_g4006 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.693, evm.TU.LG06.1002, evm.TU.LG09.1859 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g04180, gene.Posoc10g10610 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.195, evm.TU.Scaffold_9_RagTag.1263 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11201, nbisL1-mrna-20905, nbisL1-mrna-21916 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-8711, nbisL1-mrna-9592 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10597, nbisL1-mrna-21248 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.780, evm.TU.utg000006l.124 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009399, Maker00013044 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1274, nbisL1-mrna-9144 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-4809, nbisL1-mrna-7107 |
| Salicaceae | Populus euphratica | 2 | populus_peu16871, populus_peu16872 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616645, gene-LOC132628742, gene-LOC132636485 |
| Solanaceae | Solanum chilense | 3 | SOLCI002779500, SOLCI002997700, SOLCI006095700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002266, gene-LOC107007153, gene-LOC107025879 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29982_chr10_+, gene_7692 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0336, TC07G0248 |
| Zosteraceae | Zostera marina | 2 | Zosma01g35110.v3.1, Zosma05g24050.v3.1 |