Basic Information
Locus ID:
Ag11G03340
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
5' exonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 11474102 | 11478304 | + | Ag11G03340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 50,645.68 Da | 46.49 | 86.60 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07522 | DNA repair metallo-beta-lactamase | 254 | 344 | 5.6E-7 | IPR011084 |
| SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 18 | 344 | 1.87E-28 | IPR036866 |
| Gene3D | G3DSA:3.40.50.12650 | - | 157 | 326 | 3.0E-79 | - |
| Gene3D | G3DSA:3.60.15.10 | - | 6 | 348 | 3.0E-79 | IPR036866 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27410.1 | DNA repair metallo-beta-lactamase family protein. | 0 |
| RefSeq | XP_017257955.1 | PREDICTED: LOW QUALITY PROTEIN: 5' exonuclease Apollo [Daucus carota subsp. sativus] | 0 |
| Q5QJC3 | 5' exonuclease Apollo OS=Gallus gallus OX=9031 GN=DCLRE1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A164W8C5 | DRMBL domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021209 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.952267 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.524791 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.287857 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.322959 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.743577 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.540241 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.921465 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.660748 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.215658 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.756105 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.780547 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.329439 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.80627 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.360491 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.918125 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.308447 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.206368 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.104018 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.65624 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.454636 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.221171 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.613891 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.730118 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.781898 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.223578 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.320889 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.162088 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.014013 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.606356 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.225301 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.390827 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.787855 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.444526 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.91748 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.3263 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.071677 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.898364 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.846704 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.291353 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.631411 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.179318 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.211712 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.226469 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.826602 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.216485 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.108777 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.225896 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.945225 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.378457 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.010694 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24182 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20999 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037415 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24659, Sbi_jg8517 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20076 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42804, Sgl47554 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015241, gene:ENSEOMG00000039215 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0006680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30019070 |
| Apiaceae | Apium graveolens | 1 | Ag11G03340 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712980 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.220.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G33554 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G27410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001995m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g33700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g070160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2505 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2597 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g05910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2152 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1974 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004456 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3499, BH02.3454, CH02.2997 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0035920, gene-QOZ80_1BG0085930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0293880.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G022010, Oco02G022550 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G298800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601639, Pt_Chr0601653 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G007860, Chr05G025660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G514300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG046320, gene_TRIDC3BG052710 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G315700.1, TraesCS3B02G351200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb151390_P001, Zm00001eb369790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31269 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1445 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11945 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13314, nbisL1-mrna-2386 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11035 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.833 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012966 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10362 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15407 |
| Salicaceae | Populus euphratica | 3 | populus_peu16734, populus_peu16735, populus_peu16946 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617737, gene-LOC132619496 |
| Solanaceae | Solanum chilense | 1 | SOLCI003459100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024681 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7435 |