Basic Information
Locus ID:
Ag11G03334
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 11164477 | 11166191 | - | Ag11G03334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 49,384.43 Da | 44.83 | 60.80 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 44 | 161 | 2.74902E-22 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 333 | 397 | 1.3E-8 | IPR003609 |
| Pfam | PF00954 | S-locus glycoprotein domain | 236 | 312 | 2.8E-14 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 80 | 174 | 1.2E-22 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 80 | 186 | 4.84E-17 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 22 | 159 | 4.9E-13 | IPR036426 |
| SMART | SM00473 | ntp_6 | 335 | 412 | 8.0E-4 | IPR003609 |
| SMART | SM00108 | blect_4 | 35 | 161 | 1.1E-16 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 28 | 158 | 12.031473 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 333 | 413 | 8.307131 | IPR003609 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 439 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03230.8 | - | 0 |
| RefSeq | XP_017255487.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9ZR08 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana OX=3702 GN=At4g03230 PE=3 SV=3 | 0 | |
| TrEMBL | A0A164X3K8 | non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.168769 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.46208 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.35564 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.387015 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.118165 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.773512 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.292234 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.117215 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.542976 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.19069 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.711071 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.425717 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.670397 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.738807 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.420355 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.20786 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.806465 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.513754 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.972568 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.742462 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.238335 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.327389 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.080976 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.363473 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.243307 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.168442 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.542975 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.645794 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.070571 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.907545 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.564837 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.825361 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 21.076332 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.734705 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.618004 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.328194 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.40099 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.259173 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.013173 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.387762 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.252705 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.333439 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.602103 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah000566, Ah000567 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_5g117620, BVRB_5g117630, BVRB_5g117640, BVRB_5g117650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30579, Sbi_jg58673 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28540 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014903, GOSA_00014906, GOSA_00014908, GOSA_00014913 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl55195, Sgl55196, Sgl55199, Sgl60445, Sgl60447 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008135, gene:ENSEOMG00000021474 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023300, CQ.Regalona.r1.5BG0024780 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019010, pistato.v30019020 |
| Apiaceae | Apium graveolens | 3 | Ag11G03332, Ag11G03333, Ag11G03334 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G02911, Ftri4G05414 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03230.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03270.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 11 | Ceq02G2493, Ceq02G2500, Ceq02G2604, Ceq04G1183, Ceq05G2137 ... |
| Casuarinaceae | Casuarina glauca | 10 | Cgl02G2587, Cgl02G2592, Cgl04G1341, Cgl07G0430, Cgl07G0432 ... |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG04.1983, evm.TU.LG04.1984, evm.TU.LG04.1985 ... |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG01.2451, evm.TU.LG01.2452, evm.TU.LG01.2453 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1455, evm.TU.Scaffold_5_RagTag.1457 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11949, nbisL1-mrna-11951 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20422 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11031 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.837 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014027 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10263, nbisL1-mrna-10365 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15412, nbisL1-mrna-7222, nbisL1-mrna-7223 |
| Salicaceae | Populus euphratica | 3 | populus_peu16955, populus_peu18614, populus_peu18615 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132619497, gene-LOC132623522 |
| Solanaceae | Solanum chilense | 2 | SOLCI003380300, SOLCI004537700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010949, gene-LOC107024358 |