Basic Information
Locus ID:
Ag11G03316
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10541795 | 10549134 | + | Ag11G03316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 50,594.97 Da | 63.09 | 70.07 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:4.10.1000.10 | - | 1 | 36 | 3.9E-6 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 6 | 32 | 12.070252 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 304 | - | - |
| Coils | Coil | Coil | 128 | 176 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21810.1 | Zinc finger C-x8-C-x5-C-x3-H type family protein. | 0 |
| RefSeq | XP_017258569.1 | PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q6H7U2 | Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0161200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164W910 | GTD-binding domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021187 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.736338 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.136277 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.044746 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.04397 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.791475 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.485899 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.233066 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.235075 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.473185 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.595383 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.98628 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.747204 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.639177 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.907408 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.188104 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.639396 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.555017 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.578759 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.185973 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.262508 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.156787 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.003275 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.508175 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.083962 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.707674 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.812791 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.337426 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.058018 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.260277 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.174712 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.610346 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.120839 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.864168 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.354121 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.030159 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.747997 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.694839 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.708793 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.400095 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.260421 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.070603 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.293061 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.36235 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.760752 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.477118 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.766477 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.625521 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.02343 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.35331 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.425123 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21025 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25786 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037475 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41795, Sbi_jg48332 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27662 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018188, gene:ENSEOMG00000036687 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0016150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018710 |
| Apiaceae | Apium graveolens | 1 | Ag11G03316 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G003650, scaffold019629G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715485, gene-LOC120112702 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.235.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G30236 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020800m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g049610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2455 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2540, Cgl02G2552 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g00670, gene.Cymno17g06030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g03920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2040 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009920 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28328, Lb5G28334 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2726, AH07.440, BH06.2524, BH07.564, CH06.2823 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0102410, gene-QOZ80_2BG0155680 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0565380.1, HORVU.MOREX.r3.7HG0732480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020675, gene-QYE76_035923 |
| Poaceae | Oryza coarctata | 4 | Oco03G002980, Oco04G002930, Oco11G015380, Oco12G015700 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g06584.2, LOC_Os06g46890.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G045900, gene-BS78_10G233700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202535, Pt_Chr0401200 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G009870, Chr06G034660, Chr10G020550, Chr11G002080 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G285400, Tel7E01G761200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG018200, gene_TRIDC6BG024070 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G135300.1, TraesCS6B02G163300.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb207650_P006, Zm00001eb225260_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-29916, nbis-gene-33695, nbis-gene-9725 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12224, Zma_g14982, Zma_g31014, Zma_g33266 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.640, evm.TU.LG01.641, evm.TU.LG04.130 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g01820 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1488, evm.TU.Scaffold_9_RagTag.1351 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14855, nbisL1-mrna-8796 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11007, nbisL1-mrna-21327 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.828, evm.TU.utg000006l.854 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009716, Maker00013448 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10381, nbisL1-mrna-1230 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4739 |
| Salicaceae | Populus euphratica | 1 | populus_peu22670 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636631 |
| Solanaceae | Solanum chilense | 1 | SOLCI000832900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007567 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.20444_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1350 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20360.v3.1 |