halophFGD

Basic Information

Locus ID: Ag11G03258

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: BPI LBP family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	7762169	7768065	+	Ag11G03258

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.85	54,823.78 Da	36.67	112.04	0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00025	BPI1	32	256	9.74041E-42	-
CDD	cd00026	BPI2	283	478	2.62375E-53	-
Pfam	PF02886	LBP / BPI / CETP family, C-terminal domain	265	479	2.6E-27	IPR001124
Pfam	PF01273	LBP / BPI / CETP family, N-terminal domain	39	209	1.4E-20	IPR017942
SUPERFAMILY	SSF55394	Bactericidal permeability-increasing protein, BPI	246	480	2.07E-45	IPR017943
SUPERFAMILY	SSF55394	Bactericidal permeability-increasing protein, BPI	34	243	6.28E-33	IPR017943
Gene3D	G3DSA:3.15.10.10	-	38	218	3.1E-123	-
Gene3D	G3DSA:3.15.20.10	-	33	469	3.1E-123	-
SMART	SM00329	bpi2_2	278	476	1.4E-24	IPR001124
SMART	SM00328	bpi1_3	35	260	0.0085	IPR017942
PIRSF	PIRSF002417	Lipid_binding_protein	7	486	1.0E-133	IPR030675

Gene Ontology

Molecular Function:

GO:0008289 (lipid binding)

Cellular Component:

GO:0005615 (extracellular space)

KEGG Pathway

KO Term:

K05399 (lipopolysaccharide-binding protein)

Pathway:

map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G04970.1	lipid-binding serum glycoprotein family protein.
RefSeq	XP_017215071.1	PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9MAU5	Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana OX=3702 GN=At1g04970 PE=2 SV=1
TrEMBL	A0A164WAB3	BPI2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021127 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	18.529263	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	24.952141	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	25.08563	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	27.033482	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	26.683027	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	33.622807	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	32.278595	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	32.773506	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.461536	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.854489	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	15.953822	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	13.558569	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	14.585467	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	14.140055	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.704601	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.962811	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	18.070524	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.975096	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	16.127531	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	17.331648	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	18.303368	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	19.615458	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	21.575207	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	21.589207	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	15.254977	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.028183	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	17.92518	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	17.946402	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	17.509735	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	15.304891		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	18.377586		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	14.032392		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	23.664583		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.438606		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	20.903376		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	14.927665		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	17.944115		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	16.113049		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	17.338863	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	19.57176	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	17.116962	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.713086	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	25.851955	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	26.812876	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	33.423893	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.212695	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	45.255669	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	13.326643	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.423107	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.259228	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg24573, jg38407
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12202, gene_20616
Amaranthaceae	Atriplex hortensis	2	Ah008913, Ah038293
Amaranthaceae	Beta vulgaris	2	BVRB_4g089210, BVRB_9g204550
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14531, Sbi_jg18348, Sbi_jg36733, Sbi_jg53786
Amaranthaceae	Salicornia europaea	2	Seu_jg10382, Seu_jg4676
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00012689, GOSA_00017423
Amaranthaceae	Suaeda glauca	4	Sgl23472, Sgl28599, Sgl78233, Sgl80725
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000010185, gene:ENSEOMG00000013451 ... gene:ENSEOMG00000017812, gene:ENSEOMG00000029385, gene:ENSEOMG00000039104, gene:ENSEOMG00000042976, gene:ENSEOMG00000053090
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0019380, CQ.Regalona.r1.4AG0023600 ... CQ.Regalona.r1.9AG0002410, CQ.Regalona.r1.9BG0020090
Anacardiaceae	Pistacia vera	2	pistato.v30017620, pistato.v30156220
Apiaceae	Apium graveolens	5	Ag11G03258, Ag1G00793, Ag4G02413, Ag5G00781, Ag5G02303
Arecaceae	Cocos nucifera	2	COCNU_01G012470, scaffold019163G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103696215, gene-LOC103713618
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2104.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G07835, Ftri2G05687
Brassicaceae	Arabidopsis thaliana	1	AT1G04970.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007436m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g03840.v2.2, Sp3g18300.v2.2
Brassicaceae	Brassica nigra	2	BniB06g045760.2N, BniB06g045770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1372, Ceq02G2323
Casuarinaceae	Casuarina glauca	2	Cgl01G1536, Cgl02G2411
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g04910
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g08830
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.2156, evm.TU.LG05.1944
Plantaginaceae	Plantago ovata	1	Pov_00008733
Plumbaginaceae	Limonium bicolor	4	Lb1G03435, Lb2G10880, Lb8G35663, Lb8G36484
Poaceae	Echinochloa crus-galli	7	AH03.2369, AH06.1277, BH03.2495, BH06.1324, CH03.2689 ... CH06.1431, Contig2201.4
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0518910, gene-QOZ80_6AG0539330 ... gene-QOZ80_6BG0471010, gene-QOZ80_6BG0492710
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0490240.1, HORVU.MOREX.r3.7HG0674970.2
Poaceae	Lolium multiflorum	2	gene-QYE76_006102, gene-QYE76_029566
Poaceae	Oryza coarctata	4	Oco11G008020, Oco12G008070, Oco17G007660, Oco18G007920
Poaceae	Oryza sativa	2	LOC_Os06g20430.1, LOC_Os09g30474.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G221200, gene-BS78_10G130600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0303850, Pt_Chr0303863, Pt_Chr0501120, Pt_Chr0701617
Poaceae	Sporobolus alterniflorus	3	Chr10G001580, Chr10G007540, Chr11G017160
Poaceae	Thinopyrum elongatum	3	Tel5E01G417800, Tel5E01G418000, Tel7E01G405500
Poaceae	Triticum dicoccoides	4	gene_TRIDC5AG019090, gene_TRIDC5BG043070 ... gene_TRIDC7AG028490, gene_TRIDC7BG020040
Poaceae	Triticum aestivum	7	TraesCS5A02G261100.1, TraesCS5A02G261300.1 ... TraesCS5B02G259600.1, TraesCS5D02G268700.1, TraesCS7A02G223700.1, TraesCS7B02G190500.1, TraesCS7D02G225400.1
Poaceae	Zea mays	2	Zm00001eb316440_P001, Zm00001eb381520_P001
Poaceae	Zoysia japonica	2	nbis-gene-10479, nbis-gene-51648
Poaceae	Zoysia macrostachya	2	Zma_g30524, Zma_g31808
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.2223, evm.TU.LG02.2224, evm.TU.LG02.515 ... evm.TU.LG09.1759, evm.TU.LG23.456
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g09450
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.1583, evm.TU.Scaffold_7_RagTag.123
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12072, nbisL1-mrna-19608
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1232, nbisL1-mrna-3981
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-10929, nbisL1-mrna-22295
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000006l.912, evm.TU.utg000028l.73
Rhizophoraceae	Kandelia obovata	2	Maker00010356, Maker00013377
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10439, nbisL1-mrna-8037
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-15519, nbisL1-mrna-22638
Salicaceae	Populus euphratica	2	populus_peu00923, populus_peu26959
Solanaceae	Lycium barbarum	1	gene-LOC132616871
Solanaceae	Solanum chilense	1	SOLCI005641400
Solanaceae	Solanum pennellii	1	gene-LOC107026378
Tamaricaceae	Reaumuria soongarica	2	STRG.24697_chr08_+, gene_2216
Tamaricaceae	Tamarix chinensis	2	TC03G0847, TC05G2681
Zosteraceae	Zostera marina	1	Zosma03g14350.v3.1