Basic Information
Locus ID:
Ag11G03239
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 7048897 | 7049407 | + | Ag11G03239 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 17,060.90 Da | 63.63 | 101.19 | 0.00 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48170.1 | F-box family protein. encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism. | 0 |
| RefSeq | XP_017257312.1 | PREDICTED: F-box protein SNE-like [Daucus carota subsp. sativus] | 0 |
| Q9LUB6 | F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WAY5 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.408097 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.563231 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.923882 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.482193 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.842961 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.29641 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.493152 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.522983 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.892788 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.341633 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.973392 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.705168 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.864586 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.868761 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.432122 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.329828 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.846394 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.163237 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.369432 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.954876 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.203554 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.778261 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.093207 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.07489 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.109192 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.161132 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.194311 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.67749 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.303642 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.692971 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37440 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20724 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038108 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51206, Sbi_jg60513 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24474 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl80846 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016187, gene:ENSEOMG00000038760 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0003230, CQ.Regalona.r1.9BG0019250 |
| Apiaceae | Apium graveolens | 2 | Ag11G03239, Ag2G00106 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G003910, scaffold000703G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697991, gene-LOC108511003 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G18712, Ftri8G30138 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48170.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005063m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g18570.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g069380.2N, BniB04g006110.2N, BniB07g037130.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2278 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2369 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g38690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031904 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4653, CH01.5230 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0237330, gene-QOZ80_3BG0290760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0399750.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016555, gene-QYE76_070134 |
| Poaceae | Oryza coarctata | 2 | Oco05G005370, Oco06G005540 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G448100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G026420, Chr04G002070, Chr07G009170, Chr12G012980 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G446000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG005980, gene_TRIDC4BG045640 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G042900.1.cds1, TraesCS4B02G263400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb008130_P001, Zm00001eb401080_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2618, nbis-gene-4196 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1872, Zma_g4229 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2128, evm.TU.LG23.370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1620, evm.TU.Scaffold_9_RagTag.1473 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12106, nbisL1-mrna-20625 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1256, nbisL1-mrna-8393 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10897 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.369, add.evm.TU.utg000006l.405 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012999 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20877, nbisL1-mrna-22372 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15554 |
| Salicaceae | Populus euphratica | 2 | populus_peu26900, populus_peu26910 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618851, gene-LOC132642533 |
| Solanaceae | Solanum chilense | 2 | SOLCI000893600, SOLCI005979400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020124, gene-LOC107025435 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_144, gene_14580 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1893, TC03G0164 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23080.v3.1 |