Basic Information
Locus ID:
Ag11G03211
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
EFTS
Description:
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5108615 | 5115136 | + | Ag11G03211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 41,242.90 Da | 42.22 | 96.05 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14275 | UBA_EF-Ts | 57 | 93 | 1.66962E-12 | - |
| Pfam | PF00889 | Elongation factor TS | 121 | 359 | 5.5E-54 | IPR014039 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 107 | 359 | 3.27E-42 | IPR036402 |
| SUPERFAMILY | SSF46934 | UBA-like | 56 | 105 | 4.69E-11 | IPR009060 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 105 | 209 | 4.9E-15 | IPR036402 |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 217 | 358 | 7.2E-42 | IPR036402 |
| Gene3D | G3DSA:1.10.286.20 | - | 273 | 317 | 7.2E-42 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 106 | 212 | 3.4E-19 | IPR036402 |
| Gene3D | G3DSA:1.10.8.10 | - | 53 | 105 | 1.4E-14 | - |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 56 | 362 | 7.8E-64 | IPR001816 |
| ProSitePatterns | PS01127 | Elongation factor Ts signature 2. | 125 | 135 | - | IPR018101 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 56 | 377 | 44.021385 | IPR001816 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11120.1 | translation elongation factor Ts (EF-Ts), putative. | 0 |
| RefSeq | XP_017255041.1 | PREDICTED: elongation factor Ts, mitochondrial [Daucus carota subsp. sativus] | 0 |
| B9SEZ6 | Elongation factor Ts, mitochondrial OS=Ricinus communis OX=3988 GN=EFTS PE=3 SV=1 | 0 | |
| TrEMBL | A0A161ZUE1 | Elongation factor Ts, mitochondrial OS=Daucus carota subsp. sativus OX=79200 GN=EFTS PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.990704 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.743666 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.272058 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.751602 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 21.371853 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.171217 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.159676 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.781163 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.200279 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.427687 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.458147 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.516954 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.215143 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.744375 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.04504 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.915195 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.824242 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.462778 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.180256 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.908121 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.893766 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.14712 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.690796 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.56547 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.316982 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.122635 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.284773 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.939638 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.595631 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.79202 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.673435 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.457673 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.508612 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.982613 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.674076 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.019192 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.470483 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.278421 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.717538 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.751677 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.825032 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.242826 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.601627 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.288452 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.719734 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.263748 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.627402 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 33.445496 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 34.961254 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 34.062904 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg270, jg271, jg31506, jg31511, jg31717, jg800 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035893 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39862, Sbi_jg55196 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14466 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014234 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12358, Sgl17637 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017529, gene:ENSEOMG00000034904 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023100, CQ.Regalona.r1.1BG0001120 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101820, pistato.v30112030 |
| Apiaceae | Apium graveolens | 1 | Ag11G03211 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702347, gene-LOC103710649 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.1069.V1.1, AsparagusV1_05.888.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G31006 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G11120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028718m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06290.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g036340.2N, BniB08g050930.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0683 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0662 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0306s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3035 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.813 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025161, Pov_00032642 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24275 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.2706, AH02.2112, AH08.1172, BH02.2181, BH08.1143 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0524550, gene-QOZ80_6BG0478070 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0710440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034006 |
| Poaceae | Oryza coarctata | 2 | Oco15G006600, Oco16G006420 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g25290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G057000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400098 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G022380, Chr06G024120 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G020700, Tel7E01G578800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG001580, gene_TRIDC5AG001600 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G009300.1, TraesCS7A02G343400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb160260_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46616 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23930 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.502, evm.TU.LG12.1217 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1444 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20598 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14366 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21436 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.906 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009548 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13896 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4632 |
| Salicaceae | Populus euphratica | 1 | populus_peu26842 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636546 |
| Solanaceae | Solanum chilense | 1 | SOLCI005200000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007168 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29697_chr10_-, gene_9047 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0144, TC05G0253 |
| Zosteraceae | Zostera marina | 1 | Zosma03g28920.v3.1 |