Basic Information
Locus ID:
Ag11G03207
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
cellular response to glucose starvation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 4763551 | 4770223 | - | Ag11G03207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 47,348.02 Da | 65.67 | 69.63 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 183 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017215080.1 | PREDICTED: uncharacterized protein LOC108193027 [Daucus carota subsp. sativus] | 0 |
| Q93YV5 | E3 ubiquitin-protein ligase DA2 OS=Arabidopsis thaliana OX=3702 GN=DA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161YF85 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021056 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.319852 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.144197 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.923071 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.358308 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.219477 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.247328 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.795382 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 25.693014 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.401661 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.821497 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.732397 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.884806 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.996834 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.306061 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.177474 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.804728 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.896091 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.527196 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.953381 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.176707 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.379051 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.103046 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.460425 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.326331 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.693899 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.868228 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.15611 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.21585 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.604923 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.134821 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.756549 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.617956 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.840107 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.713793 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.753853 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.883739 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.675076 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 14.192492 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.655952 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.623613 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.038518 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 36.634457 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 27.522856 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.378349 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.255054 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 35.361618 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.366145 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.785763 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.90159 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.177826 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19197, jg21232 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7624 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007115 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19032, Sbi_jg37462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5303 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015301 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl03540, Sgl08687, Sgl22378, Sgl27623 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010283, gene:ENSEOMG00000029430 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0015660, CQ.Regalona.r1.4BG0016900 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30163840 |
| Apiaceae | Apium graveolens | 3 | Ag11G03207, Ag3G02453, AgUnG01518 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G014490, COCNU_02G002630, COCNU_03G013570 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701024, gene-LOC103707181, gene-LOC103715950 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1802.V1.1, AsparagusV1_01.432.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G23445, Ftri3G13063 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17145.1, AT1G78420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008156m.g.v1.0, Thhalv10018644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15270.v2.2, Sp5g33520.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g057830.2N, BniB04g031540.2N, BniB05g054310.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0843 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0969 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0017s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g10200, gene.Thate05g06020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9288 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1098 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008437 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23223, Lb7G34673 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.295, BH06.2297, BH06.404, BH07.1118, CH02.229, CH06.401 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0107600, gene-QOZ80_2BG0161220 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.6HG0583520.1, HORVU.MOREX.r3.7HG0653180.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_022008, gene-QYE76_022275, gene-QYE76_036544 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G006590, Oco04G006920, Oco11G002620, Oco11G014150 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g14720.1, LOC_Os06g06120.1, LOC_Os06g44275.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G101600, gene-BS78_10G046900 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0206429, Pt_Chr0401466, Pt_Chr0402155, Pt_Chr0405549 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G017540, Chr04G009500, Chr06G031990, Chr0G013560 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G377700, Tel7E01G223700, Tel7E01G860200 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC6AG027660, gene_TRIDC6BG033820 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS6A02G189300.1, TraesCS6B02G215300.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb204560_P001, Zm00001eb238650_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-34209, nbis-gene-34748, nbis-gene-53135 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12508, Zma_g15404, Zma_g29133, Zma_g31377 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2228, evm.TU.LG14.1403 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc02g24770, gene.Posoc02g26630, gene.Posoc04g06260 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.109, evm.TU.Scaffold_9_RagTag.88 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10525, nbisL1-mrna-22101 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20771, nbisL1-mrna-5369 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10665, nbisL1-mrna-7602 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.64, evm.TU.utg000006l.66 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013276, Maker00017737 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-6689, nbisL1-mrna-9275 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21625, nbisL1-mrna-6922 |
| Salicaceae | Populus euphratica | 2 | populus_peu00715, populus_peu17788 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616686 |
| Solanaceae | Solanum chilense | 1 | SOLCI001285700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026557 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24533_chr08_+, gene_16953 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2487, TC06G0662 |
| Zosteraceae | Zostera marina | 1 | Zosma03g33020.v3.1 |