Basic Information
Locus ID:
Ag11G03186
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 3556550 | 3558713 | - | Ag11G03186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 70,599.50 Da | 39.21 | 65.99 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 487 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14900.1 | 0 | |
| RefSeq | XP_017256833.1 | PREDICTED: uncharacterized protein LOC108226392 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161ZX15 | Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021025 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.883556 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.654213 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.1286 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.655079 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.192423 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.497213 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.02256 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.213111 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.177679 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.003482 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.437674 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.034172 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.744754 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.443862 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.529831 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.589668 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.071775 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.367286 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.702048 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.01687 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.859972 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.758067 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.269641 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.766906 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.535411 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.089002 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.503428 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.425938 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.849219 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.512967 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.85437 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.028546 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.038014 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.62246 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.856934 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.073682 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.541811 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.044728 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.778404 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.269189 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.159001 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.952458 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.523108 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.211147 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.655619 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.967587 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.697173 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.441074 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.554556 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.100891 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21186 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17570 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014569 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25000, Sbi_jg8853 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19749 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007784 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42238, Sgl47015 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000032811, gene:ENSEOMG00000045417 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019900, CQ.Regalona.r1.8BG0022460 |
| Apiaceae | Apium graveolens | 1 | Ag11G03186 |
| Arecaceae | Cocos nucifera | 2 | scaffold007826G000040, scaffold007826G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699087 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1061.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G13520 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G14900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022322m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g13110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g050130.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04450 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g09080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1446 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00019042, Pov_00019044, Pov_00019045 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1445, BH09.1626, CH09.1790 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311950, gene-QOZ80_4BG0343280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178590.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco07G009710, Oco08G009510 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g42030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G148600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302238, Pt_Chr0302275 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G009630, Chr25G010070, Chr26G010120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G617700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051630, gene_TRIDC2BG054490 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G356000.1, TraesCS2B02G372100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb078480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5172 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21549 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1781, evm.TU.LG14.97 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g06390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1660 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19877 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6410 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13585 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.27 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22080 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12353 |
| Salicaceae | Populus euphratica | 1 | populus_peu00602 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618151 |
| Solanaceae | Solanum chilense | 1 | SOLCI004077200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026394 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29375_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0093 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18900.v3.1 |