Basic Information
Locus ID:
Ag11G03181
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 3377980 | 3381539 | - | Ag11G03181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 17,249.69 Da | 53.18 | 91.89 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 146 | 1.18065E-64 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 9 | 145 | 6.6E-49 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 7 | 151 | 1.54E-55 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 152 | 2.7E-66 | IPR016135 |
| SMART | SM00212 | ubc_7 | 8 | 151 | 5.1E-69 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 5 | 151 | 54.950054 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 78 | 93 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16890.2 | ubiquitin-conjugating enzyme 36. UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. | 0 |
| RefSeq | XP_017256848.1 | PREDICTED: ubiquitin-conjugating enzyme E2 36 [Daucus carota subsp. sativus] | 0 |
| Q9FZ48 | Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana OX=3702 GN=UBC36 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834LND5 | UBC core domain-containing protein OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim06G0206900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 107.0802 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 103.18792 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 104.101845 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 100.922119 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 107.82412 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 98.636002 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 96.337494 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 78.480156 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 109.34198 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 112.481377 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 111.800827 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 118.483833 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 115.904625 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 105.664375 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 196.890442 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 142.934814 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 160.43898 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 114.030113 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 102.804199 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 139.721802 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 155.023773 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 201.488113 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 236.173279 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 202.274658 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 202.411713 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 126.750282 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 115.901787 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 102.985916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 120.312904 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 94.666664 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 91.454277 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 92.755043 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 122.225044 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 130.702148 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 126.754196 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 106.26741 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 90.717636 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 103.932053 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 57.195202 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 56.218338 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 34.948338 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 209.672363 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 184.250854 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 243.155258 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 261.177429 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 255.952316 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 240.776428 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 142.351578 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 146.830872 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 139.722946 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21180, jg24266, jg38242 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12510, gene_21172 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah007878, Ah007881, Ah011809 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g086180, BVRB_9g210270 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12052, Sbi_jg19218, Sbi_jg37628, Sbi_jg46976 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21264, Seu_jg5473 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006768, GOSA_00009606 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl23278, Sgl80462, Sgl82921 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009363, gene:ENSEOMG00000016836 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0018630, CQ.Regalona.r1.4BG0019140 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30162280 |
| Apiaceae | Apium graveolens | 3 | Ag11G03181, Ag3G00428, Ag4G02083 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G003890 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697914, gene-LOC103709457, gene-LOC103722464 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.434.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G28477, Ftri4G18511, Ftri8G14276 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G16890.3, AT1G78870.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008996m.g.v1.0, Thhalv10019278m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15030.v2.2, Sp5g33880.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g006830.2N, BniB03g027140.2N, BniB03g058480.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0929, Ceq02G2847 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1047, Cgl02G2964 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g10740, gene.Cymno06g04580, gene.Cymno07g06090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0417s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g22760, gene.Thate02g35620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1481 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008578, Pov_00009299 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G19477, Lb3G21160, Lb3G21166 |
| Poaceae | Echinochloa crus-galli | 8 | AH02.2709, AH03.1521, AH05.1417, BH02.2791, BH05.1587 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0028250, gene-QOZ80_1BG0078420 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0086940.1, HORVU.MOREX.r3.3HG0279330.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004493, gene-QYE76_054523 |
| Poaceae | Oryza coarctata | 2 | Oco01G016990, Oco02G017210 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g48280.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_02G148900, gene-BS78_03G227300, gene-BS78_K145800 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0605123, Pt_Chr0605699, Pt_Chr0605716, Pt_Chr0702660 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G013000, Chr03G013270, Chr05G020690, Chr08G013440 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G642800, Tel3E01G452000, Tel5E01G308100 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG057760, gene_TRIDC1BG066490 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G392400.1, TraesCS1B02G420600.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb157120_P003, Zm00001eb295710_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-26054, nbis-gene-35523, nbis-gene-47974 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10852, Zma_g30167, Zma_g32364, Zma_g8411 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2124, evm.TU.LG14.1298 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g18150, gene.Posoc08g10180 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1262, evm.TU.Scaffold_9_RagTag.1151 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11732, nbisL1-mrna-11733, nbisL1-mrna-21027 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18902, nbisL1-mrna-8618 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11192, nbisL1-mrna-18658 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.714, evm.TU.utg000003l.715 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013828 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1344, nbisL1-mrna-9807 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19954, nbisL1-mrna-4913 |
| Salicaceae | Populus euphratica | 3 | populus_peu00588, populus_peu17647, populus_peu37990 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616731, gene-LOC132629042 |
| Solanaceae | Solanum chilense | 1 | SOLCI004743600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026413, gene-LOC107031902 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.27025_chr04_+, STRG.3363_chr01_-, gene_14321 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1954, TC02G2769, TC03G1553 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25380.v3.1 |