Basic Information
Locus ID:
Ag11G03167
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
TAF RNA Polymerase I subunit A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 3045520 | 3053059 | - | Ag11G03167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 72,334.19 Da | 46.07 | 77.39 | -0.54 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53200.1 | 0 | |
| RefSeq | XP_017254228.1 | PREDICTED: uncharacterized protein LOC108224227 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164WDE0 | TATA box-binding protein-associated factor RNA polymerase I subunit A OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021007 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.543372 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.28702 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.565538 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.046286 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.60078 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.43405 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.640801 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.219437 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.151597 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.598796 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.509167 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.427898 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.819299 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.735656 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.777072 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.715419 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.072412 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.206672 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.213482 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.333282 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.43961 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.35538 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.658996 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.845158 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.142895 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.869071 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.704855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.143132 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.31395 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.65676 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.382876 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.13043 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.191365 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.286894 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.676462 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.035748 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.289726 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.87025 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.0021 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.9169 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.858763 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.880512 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.07922 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.735773 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.643546 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.144651 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.800237 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.843118 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.820488 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.338091 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38257 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12502 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007895 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086240 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg19224, Sbi_jg19225, Sbi_jg37635 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5479 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00006775, GOSA_00006776, GOSA_00006778 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23273, Sgl28343 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011991, gene:ENSEOMG00000029763 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0014170, CQ.Regalona.r1.4BG0019220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30162870 |
| Apiaceae | Apium graveolens | 2 | Ag11G03167, Ag9G02450 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G009790 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.3060.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G30344 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53200.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011326m.g.v1.0, Thhalv10028227m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g39780.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g056130.2N, BniB06g027560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0995 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1112, Cgl01G1167 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1413 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022211, Pov_00038895 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34094 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2238, BH06.1018, CH06.1110 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0515450, gene-QOZ80_6BG0467170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0668390.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_029033, gene-QYE76_029078, gene-QYE76_052151 ... |
| Poaceae | Oryza coarctata | 1 | Oco12G006500 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g13570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G103400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203467, Pt_Chr0404606, Pt_Chr0604854 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr11G018750, Chr11G018980, Chr11G018990, Chr14G004800 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel7E01G360300, Tel7E01G361200, Tel7E01G361300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1BG011400, gene_TRIDC7AG024670 |
| Poaceae | Triticum aestivum | 4 | TraesCS1B02G084900.1, TraesCS7A02G197000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb280030_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50282, nbis-gene-51340 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29430 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG25.1146 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.155 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21802 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10111 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7546 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.106 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017666 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6732 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21683 |
| Salicaceae | Populus euphratica | 1 | populus_peu30349 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636448 |
| Solanaceae | Solanum chilense | 1 | SOLCI003394400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005560 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22165_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1988 |
| Zosteraceae | Zostera marina | 1 | Zosma04g05660.v3.1 |