Basic Information
Locus ID:
Ag11G03155
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2681761 | 2698004 | + | Ag11G03155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 78,436.12 Da | 50.95 | 74.75 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06609 | STKc_MST3_like | 15 | 289 | 6.25188E-177 | - |
| Pfam | PF00069 | Protein kinase domain | 18 | 269 | 5.2E-69 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 313 | 2.83E-89 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 14 | 302 | 8.0E-99 | - |
| SMART | SM00220 | serkin_6 | 17 | 269 | 1.1E-95 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 17 | 269 | 50.972164 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 23 | 46 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 401 | - | - |
| Coils | Coil | Coil | 43 | 70 | - | - |
| Coils | Coil | Coil | 660 | 680 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15220.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017259003.1 | PREDICTED: serine/threonine-protein kinase sid1-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q99KH8 | Serine/threonine-protein kinase 24 OS=Mus musculus OX=10090 GN=Stk24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WDL9 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020994 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.659957 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.242349 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.151227 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.484396 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.034134 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.885315 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.834773 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.409348 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.692444 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.589703 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.200037 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.435253 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.233776 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.876078 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.201174 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.409039 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.01074 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.820724 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.217955 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.794025 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.112089 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.886887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.546352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.787399 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.91254 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.181044 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.55378 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.959745 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.255384 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.921324 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.414414 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.787164 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.078884 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.074395 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.626328 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.392982 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.386315 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.241388 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.484664 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.407291 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.942651 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.260599 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.460416 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.130568 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.385505 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.724579 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.158796 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.053606 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.601948 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.601236 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19484 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008020 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086810 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg19259, Sbi_jg37676, Sbi_jg37681, Sbi_jg37683 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5512 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006829 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23221, Sgl28287 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011816, gene:ENSEOMG00000029145 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0019300, CQ.Regalona.r1.4BG0019640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30161650 |
| Apiaceae | Apium graveolens | 2 | Ag11G03155, Ag2G00236 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012300, scaffold003358G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707176, gene-LOC103721937 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1147.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G17104, Ftri4G27080 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G53165.3, AT3G15220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011332m.g.v1.0, Thhalv10022019m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g39720.v2.2, Sp3g13430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g049840.2N, BniB06g027620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1057 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1230 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0105s00021.v1.0, Dusal.0105s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22680 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-9212, nbisL1-mrna-9219, nbisL1-mrna-9223 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1569 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00031301, Pov_00031303, Pov_00031306, Pov_00031307 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32310 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3104, BH03.3289, CH03.3475 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568540, gene-QOZ80_7BG0599880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0142660.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_041101, gene-QYE76_041188 |
| Poaceae | Oryza coarctata | 2 | Oco13G008190, Oco14G008660 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32400.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G294700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304153 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G005910, Chr24G008180, Chr27G011400, Chr28G007500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G420500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030300, gene_TRIDC2BG033980 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G233400.1, TraesCS2B02G249900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb322360_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38356 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5207 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.740, evm.TU.LG09.1912 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g07290, gene.Posoc10g03600, gene.Posoc10g06260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.205 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21825 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7995 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7508 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.131 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017764 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6757 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12545, nbisL1-mrna-21717 |
| Salicaceae | Populus euphratica | 2 | populus_peu00548, populus_peu17608 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620429 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026486 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7709 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0185 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22990.v3.1 |