halophFGD

Basic Information

Locus ID: Ag11G03149

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: spa1-related

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	2546633	2553290	+	Ag11G03149

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.69	96,658.68 Da	52.02	81.20	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	558	585	0.27	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	647	679	1.9E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	728	763	0.0051	IPR001680
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	75	332	6.5E-18	IPR011009
SUPERFAMILY	SSF50978	WD40 repeat-like	555	865	1.1E-50	IPR036322
Gene3D	G3DSA:2.130.10.10	-	533	868	5.2E-120	IPR015943
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	75	336	4.0E-23	-
SMART	SM00320	WD40_4	639	679	2.3E-7	IPR001680
SMART	SM00320	WD40_4	551	586	0.47	IPR001680
SMART	SM00320	WD40_4	772	811	13.0	IPR001680
SMART	SM00220	serkin_6	28	324	0.0043	IPR000719
SMART	SM00320	WD40_4	725	763	4.1E-5	IPR001680
SMART	SM00320	WD40_4	682	721	0.02	IPR001680
SMART	SM00320	WD40_4	597	636	9.3	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	732	765	9.731054	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	646	688	13.549507	IPR001680
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	324	10.096636	IPR000719
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	732	765	11.64467	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	646	683	10.390142	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	750	764	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	666	680	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	666	680	1.9E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	623	637	1.9E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	750	764	1.9E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	421	458	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	21	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	17	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K10143 (E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27])

Pathway:

map04115 (p53 signaling pathway) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04712 (Circadian rhythm - plant) map04712 (Circadian rhythm - plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G53090.1	SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.
RefSeq	XP_017257929.1	PREDICTED: protein SPA1-RELATED 4-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q94BM7	Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1
TrEMBL	A0A164WDU8	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020989 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	4.381589	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.946151	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	8.965458	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	9.586452	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	9.572302	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	10.563478	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	9.502683	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	6.770206	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	20.21147	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.659311	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	20.623777	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	17.562021	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.915056	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	16.177919	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.514951	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.605341	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.268022	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.808204	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	12.392951	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.946084	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	20.719721	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.563686	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.964409	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.937581	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.924071	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	19.887903	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	14.371691	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	18.267797	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.51438	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.499357		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	17.201872		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	10.776439		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.626971		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.256185		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.131567		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.915532		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.963845		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.643551		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	21.422119	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	21.868126	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	23.482557	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	15.43182	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	18.853415	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	23.014561	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	25.486637	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	18.135397	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	17.011848	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.950282	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	5.565457	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.711092	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg21401, jg38283, jg4742, jg7679
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12461, gene_14681, gene_23565
Amaranthaceae	Atriplex hortensis	3	Ah004494, Ah008097, Ah022887
Amaranthaceae	Beta vulgaris	2	BVRB_1g003520, BVRB_5g099340
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18651, Sbi_jg23996, Sbi_jg37085, Sbi_jg4000 ... Sbi_jg49209, Sbi_jg7824
Amaranthaceae	Salicornia europaea	3	Seu_jg12208, Seu_jg4907, Seu_jg6034
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000547, GOSA_00001091, GOSA_00006854
Amaranthaceae	Suaeda glauca	8	Sgl10963, Sgl16337, Sgl16365, Sgl23184, Sgl23197, Sgl28266 ... Sgl52160, Sgl57429
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006155, gene:ENSEOMG00000011056 ... gene:ENSEOMG00000012712, gene:ENSEOMG00000021956, gene:ENSEOMG00000024032, gene:ENSEOMG00000027778, gene:ENSEOMG00000036606, gene:ENSEOMG00000043390, gene:ENSEOMG00000050270
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0001800, CQ.Regalona.r1.4AG0019630 ... CQ.Regalona.r1.4BG0019970, CQ.Regalona.r1.5AG0006200, CQ.Regalona.r1.5BG0006550
Anacardiaceae	Pistacia vera	4	pistato.v30005470, pistato.v30134820, pistato.v30134830 ... pistato.v30161140
Apiaceae	Apium graveolens	3	Ag11G03149, Ag3G00381, Ag6G00115
Arecaceae	Cocos nucifera	5	COCNU_06G002990, COCNU_06G004150, COCNU_14G000140 ... contig69346437G000010, contig69362463G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103708348, gene-LOC103709020, gene-LOC103713473 ... gene-LOC103721280, gene-LOC120112296
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1508.V1.1, AsparagusV1_01.1509.V1.1 ... AsparagusV1_05.2729.V1.1
Asteraceae	Flaveria trinervia	8	Ftri13G30603, Ftri14G11337, Ftri14G18322, Ftri15G03900 ... Ftri3G27466, Ftri3G31722, Ftri4G24176, Ftri7G23246
Brassicaceae	Arabidopsis thaliana	4	AT1G53090.1, AT2G46340.1, AT3G15354.1, AT4G11110.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001291m.g.v1.0, Thhalv10011249m.g.v1.0 ... Thhalv10012045m.g.v1.0, Thhalv10020057m.g.v1.0, Thhalv10028383m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g39640.v2.2, Sp3g13540.v2.2, Sp4g28380.v2.2 ... Sp6g06310.v2.2
Brassicaceae	Brassica nigra	6	BniB01g049680.2N, BniB05g061940.2N, BniB06g027650.2N ... BniB08g030130.2N, BniB08g050940.2N, BniS06172g140.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1036, Ceq03G0200
Casuarinaceae	Casuarina glauca	4	Cgl01G1149, Cgl01G1208, Cgl03G0226, Cgl03G0248
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g16740, gene.Cymno07g06000, gene.Cymno12g01770
Dunaliellaceae	Dunaliella salina	1	Dusal.0369s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g12060, gene.Thate07g17950, gene.Thate09g15220
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-11216, nbisL1-mrna-11217, nbisL1-mrna-8290 ... nbisL1-mrna-8291
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.748, evm.TU.LG05.1603, evm.TU.LG10.1503
Plantaginaceae	Plantago ovata	3	Pov_00005319, Pov_00028431, Pov_00031342
Plumbaginaceae	Limonium bicolor	3	Lb2G08269, Lb2G11186, Lb6G32293
Poaceae	Echinochloa crus-galli	6	AH02.3029, AH05.1331, BH02.3114, BH05.1504, CH02.3403 ... CH05.1703
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0031720, gene-QOZ80_1BG0081920 ... gene-QOZ80_5AG0362570, gene-QOZ80_5BG0410740
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0090370.1, HORVU.MOREX.r3.3HG0286130.1
Poaceae	Lolium multiflorum	3	gene-QYE76_055005, gene-QYE76_055006, gene-QYE76_057161
Poaceae	Oryza coarctata	4	Oco01G020160, Oco02G019610, Oco09G017270, Oco10G017070
Poaceae	Oryza sativa	2	LOC_Os01g52640.3, LOC_Os05g49590.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G261700, gene-BS78_09G241700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0505606, Pt_Chr0505671, Pt_Chr0602795, Pt_Chr0602796 ... Pt_Chr0602808
Poaceae	Sporobolus alterniflorus	10	Chr01G015840, Chr02G010760, Chr03G015280, Chr08G015340 ... Chr0G026410, Chr0G031010, Chr12G020890, Chr18G016590, Chr20G007260, Chr22G000840
Poaceae	Thinopyrum elongatum	2	Tel1E01G678500, Tel3E01G467500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG060430, gene_TRIDC1BG069180 ... gene_TRIDC3AG042090, gene_TRIDC3BG047690
Poaceae	Triticum aestivum	5	TraesCS1D02G417600.1, TraesCS3A02G284700.2 ... TraesCS3B02G318600.1, TraesCS3D02G284500.2, TraesCS7A02G175900.1
Poaceae	Zea mays	6	Zm00001eb026560_P002, Zm00001eb154420_P004 ... Zm00001eb274370_P001, Zm00001eb296410_P001, Zm00001eb344140_P001, Zm00001eb361760_P002
Poaceae	Zoysia japonica	1	nbis-gene-12784
Poaceae	Zoysia macrostachya	2	Zma_g27411, Zma_g28832
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.723, evm.TU.LG04.3288, evm.TU.LG09.1894 ... evm.TU.LG16.312, evm.TU.LG19.1258, evm.TU.LG24.1260
Posidoniaceae	Posidonia oceanica	3	gene.Posoc08g10450, gene.Posoc09g05600, gene.Posoc09g08550
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_16_RagTag.106, evm.TU.Scaffold_5_RagTag.211 ... evm.TU.Scaffold_9_RagTag.176
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-21867, nbisL1-mrna-22351
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13591, nbisL1-mrna-3278, nbisL1-mrna-4390 ... nbisL1-mrna-9099
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10580, nbisL1-mrna-20376, nbisL1-mrna-7523
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.118, evm.TU.utg000006l.134 ... evm.TU.utg000022l.428
Rhizophoraceae	Kandelia obovata	3	Maker00013075, Maker00014245, Maker00017561
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-3569, nbisL1-mrna-6744, nbisL1-mrna-9156
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21701, nbisL1-mrna-6739, nbisL1-mrna-7085
Salicaceae	Populus euphratica	7	populus_peu00525, populus_peu00528, populus_peu03654 ... populus_peu17574, populus_peu27593, populus_peu34503, populus_peu38177
Solanaceae	Lycium barbarum	4	gene-LOC132620297, gene-LOC132632465, gene-LOC132634818 ... gene-LOC132636473
Solanaceae	Solanum chilense	4	SOLCI000577800, SOLCI002243500, SOLCI002865300 ... SOLCI005350500
Solanaceae	Solanum pennellii	4	gene-LOC107002639, gene-LOC107007180, gene-LOC107026003 ... gene-LOC107028458
Tamaricaceae	Reaumuria soongarica	3	STRG.23360_chr05_+, STRG.3284_chr01_+, STRG.9708_chr06_+
Tamaricaceae	Tamarix chinensis	3	TC01G4251, TC07G0211, TC09G2308
Zosteraceae	Zostera marina	2	Zosma01g23410.v3.1, Zosma05g03450.v3.1