Basic Information
Locus ID:
Ag11G03106
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Exocyst complex component
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1134742 | 1164442 | - | Ag11G03106 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 94,760.25 Da | 40.60 | 89.42 | -0.30 |
Protein Domain:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47550.1 | exocyst complex component sec3A. Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | 0 |
| RefSeq | XP_017255587.1 | PREDICTED: exocyst complex component SEC3A-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9SX85 | Exocyst complex component SEC3A OS=Arabidopsis thaliana OX=3702 GN=SEC3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZQK1 | Sec3-PIP2_bind domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019495 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.361191 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.208923 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.360898 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.226849 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.129413 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.444804 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.149626 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.112997 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.149846 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.246568 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.320841 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.199273 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.587364 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.125617 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.218769 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.04372 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.180277 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.461816 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.349354 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.242865 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.067398 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.300753 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.308051 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.045784 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.117687 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.097351 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.216022 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.015106 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.073151 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.051674 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.086226 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.024522 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.156851 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.435848 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.382791 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.921395 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10628, jg11927, jg6282 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15316 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002782 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41668, Sbi_jg48472 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27779 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00025870, GOSA_00025871 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl53431, Sgl58696, Sgl79523, Sgl81991 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004096, gene:ENSEOMG00000021685 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0012250, CQ.Regalona.r1.5BG0013110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045990 |
| Apiaceae | Apium graveolens | 2 | Ag11G03106, Ag2G00302 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G018100, COCNU_14G010030, scaffold016103G000030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707544, gene-LOC103721174 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.823.V1.1, AsparagusV1_07.764.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G20482, Ftri1G11120 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G47550.2, AT1G47560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011225m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g34560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g063440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1662 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1785 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g15140, gene.Cymno11g03510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.521 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002405, Pov_00015930 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G27810, Lb7G33875, Lb7G33876 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1184, AH04.1101, CH01.1464, CH04.1196, CH04.2193 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225730, gene-QOZ80_3BG0270770 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0341340.1, HORVU.MOREX.r3.4HG0343360.1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_062991, gene-QYE76_062994, gene-QYE76_063588 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G018390, Oco06G019180, Oco21G004310, Oco22G005110 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g42750.1, LOC_Os11g17600.3 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G150700, gene-BS78_08G095500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103991, Pt_Chr0104417 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G009360, Chr04G024530, Chr07G018340, Chr07G023240 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G115900, Tel4E01G131700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG036860, gene_TRIDC4AG038340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G233400.1, TraesCS4A02G243100.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb051220_P002, Zm00001eb168780_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20373, nbis-gene-39696, nbis-gene-43452 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18686, Zma_g3253, Zma_g924 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2705, evm.TU.LG08.342, evm.TU.LG18.483 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g28270, gene.Posoc04g06650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.530, evm.TU.Scaffold_8_RagTag.1051 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19099, nbisL1-mrna-8984 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6028, nbisL1-mrna-9169 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15413, nbisL1-mrna-21868 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.533, evm.TU.utg000018l.349 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003441, Maker00011961 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5840 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12465, nbisL1-mrna-24088 |
| Salicaceae | Populus euphratica | 2 | populus_peu31932, populus_peu31933 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604116, gene-LOC132618188 |
| Solanaceae | Solanum chilense | 1 | SOLCI007325100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007175, gene-LOC107026072 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1342, gene_15182, gene_4143 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2078, TC06G1642 |
| Zosteraceae | Zostera marina | 2 | Zosma06g01640.v3.1, Zosma06g06920.v3.1 |