Basic Information
Locus ID:
Ag11G03092
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Classical arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 877265 | 877770 | + | Ag11G03092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 15,674.21 Da | 89.50 | 100.72 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 97 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017238077.1 | PREDICTED: classical arabinogalactan protein 26-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166CEN7 | Classical arabinogalactan protein 26-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012428 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.198139 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.14974 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.896968 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.787268 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.008975 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.70909 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.938787 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.989877 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.367692 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.479101 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.122958 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.451839 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.534974 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.04716 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.6104 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.242601 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.703233 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.349335 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.562178 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.756186 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.289782 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.98936 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.436076 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.248229 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.322978 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.953165 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.285676 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.522975 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.374285 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.15959 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.940443 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.244895 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.471453 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.484798 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.143187 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.916104 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.046524 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.159994 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11216, jg27980, jg5695 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000006214 |
| Apiaceae | Apium graveolens | 1 | Ag11G03092 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711748 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA17387 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G47930.1, AT5G18690.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001715m.g.v1.0, Thhalv10015003m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g29850.v2.2, Sp6g25650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g044030.2N, BniS05187g200.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1617, Ceq09G1221 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1678 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g01290, gene.Cymno03g13190, gene.Cymno05g04940 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g12170, gene.Thate06g23030 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.269 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008202, Pov_00022483 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.4461, BH02.4510 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0096010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0316640.1.CDS1 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g71170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G398300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600755 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G001400, Chr05G033150, Chr05G033260, Chr08G018490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G760100 |
| Poaceae | Triticum aestivum | 1 | TraesCS3D02G470000.1.cds1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28201 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11905, Zma_g11906, Zma_g9350 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.774, evm.TU.LG04.2182, evm.TU.LG06.124 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g32300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.533 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11432 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7734 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11533, nbisL1-mrna-538 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7529 |
| Salicaceae | Populus euphratica | 1 | populus_peu31202 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132608389, gene-LOC132627514, gene-LOC132644127 |
| Solanaceae | Solanum chilense | 3 | SOLCI002256400, SOLCI003725200, SOLCI004831400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029508 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.815_chr01_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0241, TC12G1555 |
| Zosteraceae | Zostera marina | 1 | Zosma02g25520.v3.1 |