Basic Information
Locus ID:
Ag11G03085
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NPL4 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 793145 | 797693 | - | Ag11G03085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 46,021.03 Da | 38.79 | 88.91 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08061 | MPN_NPL4 | 120 | 373 | 5.40917E-74 | IPR007717 |
| CDD | cd17055 | Ubl_AtNPL4_like | 1 | 84 | 1.60753E-22 | - |
| Pfam | PF05021 | NPL4 family | 169 | 285 | 3.5E-13 | IPR007717 |
| Pfam | PF11543 | Nuclear pore localisation protein NPL4 | 1 | 85 | 4.0E-7 | IPR024682 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 3.38E-20 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 100 | 2.2E-41 | - |
| ProSiteProfiles | PS50249 | MPN domain profile. | 131 | 272 | 16.276873 | IPR037518 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47970.1 | Nuclear pore localisation protein NPL4. | 0 |
| RefSeq | XP_017243010.1 | PREDICTED: NPL4-like protein 2 [Daucus carota subsp. sativus] | 0 |
| O82264 | NPL4-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At2g47970 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166CET7 | MPN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012436 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 38.510143 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 28.684366 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.432755 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.814852 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.248928 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.381086 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.238377 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.331297 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 38.892414 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 39.785557 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.377666 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 43.413517 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 44.353477 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 45.044804 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 26.173225 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.485386 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 33.685398 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.007811 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 24.981272 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 31.583078 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 34.45541 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 52.501041 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 51.229572 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 51.073029 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 41.260937 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 40.90094 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 31.350874 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 26.141594 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 34.312634 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 20.69521 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 24.19943 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.586161 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 48.580597 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 40.159668 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 54.967911 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 38.625324 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 34.189495 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 36.690472 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 25.417334 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.426714 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.005131 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 87.138802 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 42.773495 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.245892 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.556618 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 73.595848 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.987484 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.576988 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 37.645546 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.40449 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10071, jg2502 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6274 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012583 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27910, Sbi_jg32588 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7441 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012023 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53099, Sgl58376 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010019, gene:ENSEOMG00000033897 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0012500, CQ.Regalona.r1.8BG0012550 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30011250 |
| Apiaceae | Apium graveolens | 1 | Ag11G03085 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002660, COCNU_12G001680 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719699, gene-LOC103723509 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1387.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G22842, Ftri12G18856 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G47970.1, AT3G63000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001466m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g29890.v2.2, Sp5g00520.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g061300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1631 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1692 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g05300 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0617s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g22970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.253 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011645, Pov_00015301 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G29054 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1822, BH02.1769, CH02.2000 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0017370, gene-QOZ80_1BG0066530 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0178620.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_050507, gene-QYE76_050524 |
| Poaceae | Oryza coarctata | 2 | Oco01G010540, Oco02G010950 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g27990.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G075600, gene-BS78_10G044100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0200319, Pt_Chr0200338, Pt_Chr0603536 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G007360, Chr04G019930, Chr06G020870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G283700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG018030, gene_TRIDC6BG023920 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G133900.1.cds1, TraesCS6B02G162100.2.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb098320_P001, Zm00001eb146560_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21697, nbis-gene-36691 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10361, Zma_g25018 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.186, evm.TU.LG04.566 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10590 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.920, evm.TU.Scaffold_9_RagTag.866 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11423 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19932, nbisL1-mrna-7728 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11540 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.259 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013988 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10036 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7536 |
| Salicaceae | Populus euphratica | 3 | populus_peu01094, populus_peu27191, populus_peu38181 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608302 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023444 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6270 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0298 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20210.v3.1 |