Basic Information
Locus ID:
Ag11G03079
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 742848 | 749261 | + | Ag11G03079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 32,091.17 Da | 40.10 | 79.32 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16654 | RING-Ubox_CHIP | 201 | 267 | 4.23178E-44 | - |
| Pfam | PF04564 | U-box domain | 201 | 273 | 7.3E-28 | IPR003613 |
| Pfam | PF13181 | Tetratricopeptide repeat | 80 | 108 | 0.088 | IPR019734 |
| Pfam | PF13414 | TPR repeat | 18 | 53 | 3.8E-7 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 10 | 130 | 3.59E-25 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 275 | 5.18E-27 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 7 | 141 | 3.8E-29 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 277 | 3.4E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 204 | 267 | 3.1E-27 | IPR003613 |
| SMART | SM00028 | tpr_5 | 79 | 112 | 2.2 | IPR019734 |
| SMART | SM00028 | tpr_5 | 45 | 78 | 0.3 | IPR019734 |
| SMART | SM00028 | tpr_5 | 11 | 44 | 8.6E-4 | IPR019734 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 200 | 274 | 33.332363 | IPR003613 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 11 | 44 | 9.6174 | IPR019734 |
| Coils | Coil | Coil | 157 | 195 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07370.1 | carboxyl terminus of HSC70-interacting protein. Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. | 0 |
| RefSeq | XP_017237821.1 | PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Daucus carota subsp. sativus] | 0 |
| Q9SRS9 | E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana OX=3702 GN=CHIP PE=1 SV=1 | 0 | |
| TrEMBL | A0A166CIE7 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012688 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.62359 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.488097 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.239489 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.578478 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.749943 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.705353 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.913952 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 25.563379 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.179579 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.767774 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.36925 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.903346 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.968192 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.449667 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.157564 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.898979 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.490401 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.740582 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.241735 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.259148 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.222685 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.904555 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.342643 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.49403 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.566347 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.112504 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.110272 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.114311 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.395379 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.498795 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.133663 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.86347 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 27.535847 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.686401 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.00629 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.833146 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.887674 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.597235 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.167929 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.873956 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.581023 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 45.576836 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.023563 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.004797 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.877155 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 39.674515 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.944127 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.949429 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.779697 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.571432 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16783, jg36077 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5427 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26634, Sbi_jg33928 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011841 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl73933, Sgl73940, Sgl77447 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007491, gene:ENSEOMG00000036203 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0009360, CQ.Regalona.r1.9BG0009590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013840 |
| Apiaceae | Apium graveolens | 2 | Ag11G03079, Ag7G00095 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G021570, COCNU_02G012130 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701608, gene-LOC103706090, gene-LOC103715638 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.484.V1.1, AsparagusV1_02.537.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G01476, Ftri12G17654, Ftri9G00783 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021313m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g056540.2N, BniB03g024050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1534 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1564 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02640 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0119s00028.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate04g01940, gene.Thate05g16610, gene.Thate09g18560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1438 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00036564, Pov_00036566 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G28505, Lb5G28736, Lb5G28743 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.669, AH08.114, BH05.724, BH08.59, CH02.3096, CH05.827 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0408740, gene-QOZ80_8AG0615250 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0002560.1, HORVU.MOREX.r3.7HG0705230.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008510, gene-QYE76_033330 |
| Poaceae | Oryza coarctata | 3 | Oco09G000220, Oco10G000300, Oco16G000770 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g01460.1, LOC_Os08g02140.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G017500, gene-BS78_09G004900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0402646, Pt_Chr0402653, Pt_Chr0501049 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr18G003110, Chr20G012650, Chr22G016990, Chr22G017010 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G031400, Tel1E01G034100, Tel7E01G548300 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG001420, gene_TRIDC1AG001480 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G013700.1, TraesCS1B02G017900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb260730_P002, Zm00001eb267460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51914 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22373, Zma_g27525 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1089, evm.TU.LG12.645 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g04990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1730, evm.TU.Scaffold_9_RagTag.1515 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12223, nbisL1-mrna-20688, nbisL1-mrna-20802 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12158, nbisL1-mrna-8549 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21503 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.956, evm.TU.utg000006l.1003 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009602, Maker00013572 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10538, nbisL1-mrna-13940 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15659, nbisL1-mrna-4572 |
| Salicaceae | Populus euphratica | 1 | populus_peu30857 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606967, gene-LOC132610572 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021201 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2212_chr01_- |
| Zosteraceae | Zostera marina | 2 | Zosma02g13100.v3.1, Zosma05g01750.v3.1 |