Basic Information
Locus ID:
Ag11G03078
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
AGC2-1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 732395 | 734015 | - | Ag11G03078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 44,917.08 Da | 39.34 | 87.75 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 21 | 330 | 1.5E-54 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 12 | 351 | 4.99E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 17 | 111 | 6.4E-41 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 231 | 348 | 4.7E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 112 | 181 | 6.4E-41 | - |
| SMART | SM00220 | serkin_6 | 19 | 330 | 2.5E-67 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 19 | 330 | 44.103039 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 149 | 161 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25250.1 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein. Arabidopsis protein kinase | 0 |
| RefSeq | XP_017238713.1 | PREDICTED: serine/threonine-protein kinase OXI1 [Daucus carota subsp. sativus] | 0 |
| Q9LSF1 | Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana OX=3702 GN=OXI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162APA8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012689 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 35.775597 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 57.801289 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 48.581532 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 49.988098 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 47.977203 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.449371 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.498112 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.264661 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.338566 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 37.248688 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.031105 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.969313 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.307091 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.265221 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.104539 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.188768 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.441547 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 23.480118 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.114478 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 63.038685 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.451797 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 41.028141 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 35.106998 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.965792 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.022629 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.722579 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.095694 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.489971 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.594387 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.193427 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.534307 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.397311 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.286263 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.057543 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.124314 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.567455 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.809892 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.109154 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.450341 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.607619 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.946569 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 119.712471 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 46.72398 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.813828 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.40681 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 56.014008 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.877193 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 92.9757 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.913347 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.264201 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg36076, jg37740, jg8078 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6515 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028393 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26636, Sbi_jg33926 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15152 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011839 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73942, Sgl77449 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004855, gene:ENSEOMG00000038128 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0009340, CQ.Regalona.r1.9BG0009570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013820 |
| Apiaceae | Apium graveolens | 2 | Ag11G03078, Ag9G01629 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G012880, scaffold008808G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708546, gene-LOC103717538 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G09260, Ftri15G21140, Ftri3G14544, Ftri9G03192 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G25250.1, AT4G13000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002544m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g22900.v2.2, Sp7g10060.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g034800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1532 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1562 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04860 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g15310, gene.Thate01g25840, gene.Thate05g10830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6411 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1440 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036567 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23899, Lb5G28745 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1378, BH09.1559, CH09.1679 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0192000, gene-QOZ80_4AG0312830 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0177320.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_023516, gene-QYE76_023517, gene-QYE76_037622 |
| Poaceae | Oryza coarctata | 4 | Oco03G014610, Oco04G015090, Oco07G009230, Oco08G009100 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g39090.1, LOC_Os04g41160.1, LOC_Os12g09630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G187900, gene-BS78_06G141600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307185 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G007900, Chr15G009570, Chr23G010120, Chr25G009510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G604500, Tel6E01G419500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG050220, gene_TRIDC2BG053480 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G347400.1, TraesCS2B02G365900.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb079000_P001, Zm00001eb187940_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-29722, nbis-gene-36935, nbis-gene-7343 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13840, Zma_g19950, Zma_g21501 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1030, evm.TU.LG18.701, evm.TU.LG26.326 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1728, evm.TU.Scaffold_9_RagTag.1514 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12221, nbisL1-mrna-20687, nbisL1-mrna-20803 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12156, nbisL1-mrna-6006 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10798, nbisL1-mrna-21502 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.955, evm.TU.utg000006l.1001 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009308, Maker00013570 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10536, nbisL1-mrna-13939 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15657, nbisL1-mrna-4573 |
| Salicaceae | Populus euphratica | 1 | populus_peu30855 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609835 |
| Solanaceae | Solanum chilense | 1 | SOLCI006976100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030613 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16512 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2551 |
| Zosteraceae | Zostera marina | 2 | Zosma04g17560.v3.1, Zosma05g07070.v3.1 |