halophFGD

Basic Information

Locus ID: Ag10G03031

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein STRUBBELIG-RECEPTOR FAMILY 2-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	240488968	240494039	+	Ag10G03031

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.02	75,135.97 Da	50.94	94.25	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	29	67	4.7E-7	IPR013210
Pfam	PF13516	Leucine Rich repeat	139	153	1.9	IPR001611
Pfam	PF00069	Protein kinase domain	410	622	5.2E-35	IPR000719
Pfam	PF13855	Leucine rich repeat	157	198	3.6E-8	IPR001611
Pfam	PF13516	Leucine Rich repeat	93	108	0.6	IPR001611
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	383	624	1.18E-61	IPR011009
SUPERFAMILY	SSF52058	L domain-like	25	254	5.89E-39	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	27	269	1.0E-49	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	487	657	1.7E-37	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	373	486	3.6E-27	-
SMART	SM00369	LRR_typ_2	92	116	65.0	IPR003591
SMART	SM00369	LRR_typ_2	206	231	300.0	IPR003591
SMART	SM00369	LRR_typ_2	138	161	16.0	IPR003591
SMART	SM00369	LRR_typ_2	162	185	68.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	409	682	31.919531	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	263	287	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G06820.1	STRUBBELIG-receptor family 2.
RefSeq	XP_017255956.1	PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 2 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FG24	Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana OX=3702 GN=SRF2 PE=1 SV=1
TrEMBL	A0A164X7A7	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019838 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.264615	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.274953	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.155739	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.244761	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.328962	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.322917	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.196926	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	47.269131	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	13.151465	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.244406	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.033511	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.089265	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.112953	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.49641	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.253819	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.630731	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.369367	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.611921	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.591958	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.131128	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.206096	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.016636		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.326846		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.022845		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.085486		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.170948	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.179985	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.035668	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.046367	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.156497	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.091908	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.160464	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.042749	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.162997	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.968295	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.268502	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.512123	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg4384
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4708
Amaranthaceae	Atriplex hortensis	1	Ah021578
Amaranthaceae	Beta vulgaris	1	BVRB_3g060500
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg59211, Sbi_jg63417
Amaranthaceae	Salicornia europaea	1	Seu_jg23477
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00018455
Amaranthaceae	Suaeda glauca	2	Sgl02640, Sgl07798
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000029024
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0019930, CQ.Regalona.r1.3BG0020650
Apiaceae	Apium graveolens	1	Ag10G03031
Arecaceae	Cocos nucifera	1	COCNU_01G007160
Arecaceae	Phoenix dactylifera	1	gene-LOC103705384
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.791.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G30517, Ftri3G13907
Brassicaceae	Arabidopsis thaliana	1	AT5G06820.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10012782m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g36040.v2.2
Brassicaceae	Brassica nigra	1	BniB02g053970.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G1139
Casuarinaceae	Casuarina glauca	1	Cgl04G1306
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g28260
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1739
Plantaginaceae	Plantago ovata	1	Pov_00030680
Plumbaginaceae	Limonium bicolor	1	Lb3G16436
Portulacaceae	Portulaca oleracea	3	evm.TU.LG07.570, evm.TU.LG15.372, evm.TU.LG15.373
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.1227
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-6396
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13306
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000016l.769
Rhizophoraceae	Kandelia obovata	1	Maker00017085
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-7496
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-13417
Salicaceae	Populus euphratica	1	populus_peu12293
Solanaceae	Lycium barbarum	2	gene-LOC132608785, gene-LOC132637250
Solanaceae	Solanum chilense	1	SOLCI000372100
Solanaceae	Solanum pennellii	1	gene-LOC107013267
Tamaricaceae	Reaumuria soongarica	1	gene_5158
Tamaricaceae	Tamarix chinensis	1	TC06G1618