Basic Information
Locus ID:
Ag10G03030
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 240478424 | 240484163 | - | Ag10G03030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 95,524.84 Da | 54.63 | 71.74 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11660 | SANT_TRF | 796 | 851 | 9.86982E-13 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 487 | 539 | 1.93E-8 | IPR011011 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 797 | 857 | 2.05E-10 | IPR009057 |
| Gene3D | G3DSA:1.10.246.220 | - | 798 | 862 | 1.1E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 484 | 543 | 5.6E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 490 | 535 | 1.0E-6 | IPR001965 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 792 | 850 | 6.388227 | IPR001005 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 488 | 537 | 8.6445 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 491 | 534 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 240 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017258804.1 | PREDICTED: uncharacterized protein LOC108227921 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164WRU4 | Myb-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020474 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.851534 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.564158 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.052235 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.408781 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.371505 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.20353 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.11612 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.998949 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.670774 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.07445 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.685476 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.355609 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.765689 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.951517 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.524951 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.455666 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.435112 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.424446 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.781861 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.145784 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.338938 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.889591 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.920874 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.038319 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.167637 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.541439 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.670765 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.956015 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.954862 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.398796 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.982017 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.657884 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.694017 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.650939 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.660942 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.171609 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.283324 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.483269 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.052594 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.902393 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.887254 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.97391 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.052375 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.009928 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.818079 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.502143 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.209005 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.69944 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.124526 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.731475 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19224, jg21261, jg27406 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19057, gene_20930 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah021737, Ah037531 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g061270, BVRB_9g206940 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59288, Sbi_jg63333 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23542 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018405, GOSA_00020780 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02670, Sgl07828, Sgl78977, Sgl81428 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000011658, gene:ENSEOMG00000031732 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0020670, CQ.Regalona.r1.3BG0021490 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30016690, pistato.v30073220, pistato.v30186930 ... |
| Apiaceae | Apium graveolens | 6 | Ag10G02368, Ag10G03030, Ag4G01382, Ag4G02371, Ag6G00131 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G003140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695626 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G00635, Ftri15G30446, Ftri9G31182 |
| Brassicaceae | Arabidopsis thaliana | 5 | AT1G01150.1, AT1G14770.1, AT1G68030.1, AT4G12670.1 ... |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10003829m.g.v1.0, Thhalv10004420m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g13210.v2.2, Sp1g41390.v2.2, Sp2g18670.v2.2 ... |
| Brassicaceae | Brassica nigra | 11 | BniB02g069480.2N, BniB03g045390.2N, BniB06g040100.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G2199, Ceq02G2226, Ceq04G1094 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2319, Cgl04G1243 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g20360 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG01.2464, evm.TU.LG02.146, evm.TU.LG04.2320 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001652, Pov_00034004 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37378, Lb1G06200, Lb1G06648, Lb7G35056 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.445, AH07.1917, BH03.538, BH07.1892, CH03.627 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0558630, gene-QOZ80_7BG0589780 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0305350.1, HORVU.MOREX.r3.4HG0416120.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_051611, gene-QYE76_071686 |
| Poaceae | Oryza coarctata | 4 | Oco21G001720, Oco21G005620, Oco21G005680, Oco22G006730 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g06190.1, LOC_Os11g29240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G059000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101025, Pt_Chr0101139, Pt_Chr0204841, Pt_Chr0303737 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G017040, Chr24G000160, Chr28G002160 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G627000, Tel4E01G605800, Tel6E01G688200 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG056250, gene_TRIDC3BG062940 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS3A02G395200.1, TraesCS3B02G427000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb210290_P002, Zm00001eb210320_P003 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26777, nbis-gene-35632 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g4832, Zma_g6110 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1168, evm.TU.LG21.800 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc05g16360, gene.Posoc06g07180, gene.Posoc06g22190 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1854, evm.TU.Scaffold_2_RagTag.1153 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-3793, nbisL1-mrna-5617, nbisL1-mrna-6424 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1360, nbisL1-mrna-20829, nbisL1-mrna-2356 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-18845, nbisL1-mrna-18846, nbisL1-mrna-3672 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.537, evm.TU.utg000016l.720 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00005349, Maker00016525, Maker00016809 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10973, nbisL1-mrna-12440, nbisL1-mrna-4931 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-13388, nbisL1-mrna-13790, nbisL1-mrna-21420 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu10986, populus_peu26123, populus_peu33155 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616695, gene-LOC132634546 |
| Solanaceae | Solanum chilense | 3 | SOLCI002778000, SOLCI006352900, SOLCI006858100 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002801, gene-LOC107012652, gene-LOC107024302 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.18451_chr10_+, STRG.7555_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1951, TC06G2430 |
| Zosteraceae | Zostera marina | 2 | Zosma01g04490.v3.1, Zosma01g24700.v3.1 |