Basic Information
Locus ID:
Ag10G03007
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 240256045 | 240259122 | + | Ag10G03007 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.33 | 18,655.38 Da | 51.69 | 74.82 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01157 | Ribosomal protein L21e | 1 | 101 | 7.1E-45 | IPR001147 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 3 | 99 | 2.74E-34 | IPR008991 |
| Gene3D | G3DSA:2.30.30.70 | Ribosomal protein L21 | 1 | 97 | 2.5E-44 | IPR036948 |
| Gene3D | G3DSA:6.10.250.3260 | - | 99 | 156 | 3.0E-24 | - |
| ProSitePatterns | PS01171 | Ribosomal protein L21e signature. | 37 | 62 | - | IPR018259 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09590.1 | Translation protein SH3-like family protein. | 0 |
| RefSeq | XP_017237890.1 | PREDICTED: 60S ribosomal protein L21-1 [Daucus carota subsp. sativus] | 0 |
| Q43291 | Large ribosomal subunit protein eL21z/eL21y OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2 | 0 | |
| TrEMBL | A0A165YC77 | 60S ribosomal protein L21-1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009692 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 117.918892 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 73.620903 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 70.811729 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 73.610245 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 76.908707 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 62.353386 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 47.861137 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 33.522251 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 150.429779 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 154.195221 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 158.648575 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 169.88237 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 155.568771 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 181.783386 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 171.1185 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 195.611694 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 203.930008 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 139.901947 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 126.512848 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 182.727936 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 147.637924 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 235.186615 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 264.815491 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 254.844635 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 234.606094 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 169.151703 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 164.218658 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 145.093216 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 171.890839 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 141.567017 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 228.117981 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 241.813416 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 97.483597 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 241.584015 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 124.189056 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 107.337921 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 71.861923 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 89.737228 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 222.841278 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 106.965546 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 65.741745 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 173.077087 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 205.860275 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 141.560257 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 158.07843 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 258.947968 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 83.071289 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 282.966064 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 246.131516 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 220.736923 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10066, jg15983 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_4491, gene_4493 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021402 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10781, Sbi_jg47518, Sbi_jg59140, Sbi_jg63495 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg21768, Seu_jg23407, Seu_jg23408 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012794 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02532, Sgl07687, Sgl11324, Sgl16715 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012502, gene:ENSEOMG00000030401 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019470, CQ.Regalona.r1.3BG0019780 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30167400, pistato.v30278350, pistato.v30282750 |
| Apiaceae | Apium graveolens | 3 | Ag10G03007, Ag3G02827, Ag4G02007 |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G011460, COCNU_10G006950, contig69236568G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706959, gene-LOC103711864 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2008.V1.1, AsparagusV1_10.1884.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G04765, Ftri16G13556, Ftri17G02051, Ftri2G31855 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G09590.1, AT1G09690.1, AT1G57660.1, AT1G57860.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10008951m.g.v1.0, Thhalv10008955m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g08200.v2.2, Sp1g08280.v2.2, Sp2g05630.v2.2 ... |
| Brassicaceae | Brassica nigra | 9 | BniB02g004820.2N, BniB02g004870.2N, BniB02g004910.2N ... |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0644, Cgl07G0688 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g00280, gene.Cymno11g11010 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1405s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 13 | gene.Thate01g01240, gene.Thate01g17510, gene.Thate02g20050 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8502 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.318, evm.TU.LG03.2540, evm.TU.LG11.504 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00012719, Pov_00030701, Pov_00038707, Pov_00040353 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06479 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1831, AH01.5259, BH01.2130, BH01.4953, CH01.2244 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0127200, gene-QOZ80_2BG0182670 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011394, gene-QYE76_070880 |
| Poaceae | Oryza coarctata | 4 | Oco05G002560, Oco06G002500, Oco19G005620, Oco20G005550 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g04750.1, LOC_Os10g32820.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G211400, gene-BS78_01G485500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100125, Pt_Chr0100236, Pt_Chr0502529 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G037540, Chr06G013230, Chr09G010490, Chr0G025870 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G275400, Tel4E01G565000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG022330, gene_TRIDC1BG027010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G147000.1, TraesCS1B02G164500.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb003420_P001, Zm00001eb046340_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-19260, nbis-gene-21219, nbis-gene-2933 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g13352, Zma_g16161, Zma_g2093, Zma_g4446 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG15.1046 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g10240, gene.Posoc08g06140, gene.Posoc08g06160 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1272, evm.TU.Scaffold_2_RagTag.1113 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4078, nbisL1-mrna-6329 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13266, nbisL1-mrna-14709 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-22205, nbisL1-mrna-4164 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.575, evm.TU.utg000016l.354 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005085, Maker00016906 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12480, nbisL1-mrna-7525 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5643 |
| Salicaceae | Populus euphratica | 4 | populus_peu03876, populus_peu12341, populus_peu26049 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607371, gene-LOC132607533 |
| Solanaceae | Solanum chilense | 2 | SOLCI003357200, SOLCI003572300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002550, gene-LOC107002693 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.9818_chr06_-, gene_9601 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1729 |
| Zosteraceae | Zostera marina | 2 | Zosma01g09740.v3.1, Zosma06g28500.v3.1 |