halophFGD

Basic Information

Locus ID: Ag10G02942

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR receptor-like serine threonine-protein kinase At1g56130

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	238570316	238581683	-	Ag10G02942

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.56	42,741.65 Da	43.20	86.50	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF11721	Malectin domain	256	382	2.5E-24	IPR021720
SUPERFAMILY	SSF52058	L domain-like	71	229	3.78E-29	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	46	160	1.2E-20	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	161	226	2.4E-12	IPR032675
Gene3D	G3DSA:2.60.120.430	-	254	384	1.7E-20	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G56145.1	Leucine-rich repeat transmembrane protein kinase.
RefSeq	XP_017258001.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana OX=3702 GN=At1g56140 PE=2 SV=2
TrEMBL	A0A161ZX01	Non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019923 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	7.329425	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.656855	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	8.848134	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.215305	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.556789	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	11.658629	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.420365	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	13.336812	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.459261	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.503069	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.77634	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.957769	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.377723	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.327195	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.479691	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.899194	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.267413	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.394001	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.368905	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.510942	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.76792	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.677907	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.473757	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.792637	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.922983	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.442507	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.805867	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.469768	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.356625	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.676068		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.399846		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.947305		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.389462		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.161018		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.262392		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.162726		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.146836		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.070351	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.641626	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.123214	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	47.751144	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	18.168022	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.44865	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.128146	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	21.222996	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.261414	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.446596	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.414357	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg21696, jg24689, jg24690, jg24692, jg24693
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12813, gene_12816
Amaranthaceae	Atriplex hortensis	1	Ah033832
Amaranthaceae	Beta vulgaris	3	BVRB_2g042370, BVRB_7g166910, BVRB_7g166930
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg20185, Sbi_jg44294
Amaranthaceae	Salicornia europaea	1	Seu_jg17722
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00019003, GOSA_00019006
Amaranthaceae	Suaeda glauca	4	Sgl13200, Sgl18414, Sgl65091, Sgl69514
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000015071, gene:ENSEOMG00000035136 ... gene:ENSEOMG00000048682
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.1AG0013890
Anacardiaceae	Pistacia vera	35	pistato.v30029680, pistato.v30030470, pistato.v30031210 ... pistato.v30031240, pistato.v30031260, pistato.v30031420, pistato.v30031450, pistato.v30031590, pistato.v30031700, pistato.v30074880, pistato.v30074890, pistato.v30100020, pistato.v30100060, pistato.v30107510, pistato.v30107550, pistato.v30107660, pistato.v30107670, pistato.v30107680, pistato.v30107690, pistato.v30107710, pistato.v30107740, pistato.v30107770, pistato.v30122200, pistato.v30122260, pistato.v30185090, pistato.v30185480, pistato.v30188690, pistato.v30188700, pistato.v30188730, pistato.v30188740, pistato.v30188770, pistato.v30190420, pistato.v30190440, pistato.v30190480, pistato.v30190490
Apiaceae	Apium graveolens	2	Ag10G02937, Ag10G02942
Arecaceae	Cocos nucifera	4	COCNU_06G018860, COCNU_06G018900, COCNU_06G018910 ... COCNU_12G001000
Arecaceae	Phoenix dactylifera	5	gene-LOC103702231, gene-LOC103719355, gene-LOC103722528 ... gene-LOC108510999, gene-LOC120106160
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.83.V1.1
Asteraceae	Flaveria trinervia	4	Ftri15G18464, Ftri2G03343, Ftri2G13310, Ftri3G01127
Brassicaceae	Arabidopsis thaliana	4	AT1G56120.1, AT1G56130.1, AT1G56140.1, AT1G56145.2
Brassicaceae	Eutrema salsugineum	7	Thhalv10000587m.g.v1.0, Thhalv10011215m.g.v1.0 ... Thhalv10012006m.g.v1.0, Thhalv10012222m.g.v1.0, Thhalv10016175m.g.v1.0, Thhalv10018064m.g.v1.0, Thhalv10019658m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g41780.v2.2, Sp1g41790.v2.2, Sp2g08080.v2.2 ... Sp5g25410.v2.2, Sp5g25420.v2.2
Brassicaceae	Brassica nigra	12	BniB02g060760.2N, BniB03g047960.2N, BniB04g013120.2N ... BniB04g013180.2N, BniB04g017710.2N, BniB04g053400.2N, BniB05g064640.2N, BniB05g067610.2N, BniB05g067640.2N, BniB05g067690.2N, BniB05g067700.2N, BniB07g000310.2N
Casuarinaceae	Casuarina equisetifolia	16	Ceq01G1624, Ceq01G1625, Ceq01G1626, Ceq01G1640, Ceq01G1642 ... Ceq01G1643, Ceq01G1644, Ceq01G1645, Ceq01G1646, Ceq01G1647, Ceq01G1649, Ceq01G1650, Ceq01G1655, Ceq01G1661, Ceq01G1664, Ceq02G2148
Casuarinaceae	Casuarina glauca	10	Cgl01G1805, Cgl01G1806, Cgl01G1807, Cgl01G1808, Cgl01G1809 ... Cgl01G1810, Cgl01G1814, Cgl01G1820, Cgl01G1821, Cgl01G1823
Cymodoceaceae	Cymodocea nodosa	13	gene.Cymno13g03120, gene.Cymno13g03130, gene.Cymno13g03140 ... gene.Cymno13g03150, gene.Cymno17g01370, gene.Cymno17g01380, gene.Cymno17g01390, gene.Cymno17g01400, gene.Cymno17g01420, gene.Cymno17g01440, gene.Cymno17g01490, gene.Cymno17g01500, gene.Cymno17g03770
Hydrocharitaceae	Thalassia testudinum	14	gene.Thate04g03390, gene.Thate04g03420, gene.Thate04g03430 ... gene.Thate04g03440, gene.Thate04g03450, gene.Thate04g03460, gene.Thate05g20080, gene.Thate05g20090, gene.Thate05g20130, gene.Thate05g20160, gene.Thate05g20170, gene.Thate05g20180, gene.Thate07g19550, gene.Thate07g19560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4659
Nitrariaceae	Nitraria sibirica	8	evm.TU.LG01.2316, evm.TU.LG01.2317, evm.TU.LG01.2919 ... evm.TU.LG01.2921, evm.TU.LG01.2923, evm.TU.LG01.2924, evm.TU.LG01.2926, evm.TU.LG09.395
Plantaginaceae	Plantago ovata	5	Pov_00006184, Pov_00006215, Pov_00006216, Pov_00006217 ... Pov_00015324
Plumbaginaceae	Limonium bicolor	7	Lb3G19068, Lb3G19097, Lb3G19098, Lb3G19099, Lb3G19100 ... Lb4G24607, Lb7G34136
Poaceae	Echinochloa crus-galli	15	AH03.726, AH08.600, AH09.2299, AH09.2300, AH09.2301, CH03.1 ... AH09.2302, BH03.859, BH08.654, BH09.2483, BH09.2484, CH03.955, CH08.740, CH09.2627, CH09.2716
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_4AG0303940, gene-QOZ80_4AG0303960 ... gene-QOZ80_4BG0334830, gene-QOZ80_4BG0334840, gene-QOZ80_4BG0334860, gene-QOZ80_8AG0620900, gene-QOZ80_8AG0620910, gene-QOZ80_8BG0652300, gene-QOZ80_8BG0652310
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0190260.1, HORVU.MOREX.r3.2HG0190290.1 ... HORVU.MOREX.r3.2HG0190300.1, HORVU.MOREX.r3.3HG0309730.1, HORVU.MOREX.r3.7HG0639820.1
Poaceae	Lolium multiflorum	8	gene-QYE76_042675, gene-QYE76_042728, gene-QYE76_042772 ... gene-QYE76_046024, gene-QYE76_047765, gene-QYE76_047767, gene-QYE76_047769, gene-QYE76_047770
Poaceae	Oryza coarctata	12	Oco07G016010, Oco08G015510, Oco09G005400, Oco09G005420 ... Oco10G005340, Oco10G005360, Oco10G005370, Oco10G005380, Oco15G003980, Oco15G003990, Oco16G003840, Oco17G006820
Poaceae	Oryza sativa	20	LOC_Os04g22470.1, LOC_Os04g52590.1, LOC_Os04g52600.1 ... LOC_Os04g52606.1, LOC_Os04g52614.1, LOC_Os04g52630.1, LOC_Os04g52640.1, LOC_Os05g16430.1, LOC_Os05g16740.1, LOC_Os05g16824.1, LOC_Os05g16930.1, LOC_Os05g17604.1, LOC_Os05g17810.1, LOC_Os08g10150.1, LOC_Os08g10250.1, LOC_Os08g10290.1, LOC_Os08g10300.1, LOC_Os08g10310.1, LOC_Os08g10320.1, LOC_Os08g10330.1
Poaceae	Paspalum vaginatum	11	gene-BS78_02G112500, gene-BS78_02G112600 ... gene-BS78_06G228400, gene-BS78_06G228500, gene-BS78_06G228600, gene-BS78_06G228700, gene-BS78_06G228800, gene-BS78_06G228900, gene-BS78_06G229100, gene-BS78_07G079100, gene-BS78_07G079200
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0301156, Pt_Chr0301157, Pt_Chr0301158, Pt_Chr0301213 ... Pt_Chr0301216, Pt_Chr0307400, Pt_Chr0307402, Pt_Chr0401339, Pt_Chr0405649
Poaceae	Sporobolus alterniflorus	10	Chr16G002620, Chr17G002320, Chr20G010360, Chr23G004360 ... Chr25G003120, Chr25G003130, Chr26G015590, Chr29G009960, Chr30G003100, Chr30G003110
Poaceae	Thinopyrum elongatum	7	Tel2E01G712200, Tel2E01G712300, Tel2E01G712500 ... Tel3E01G671900, Tel3E01G672200, Tel7E01G079700, Tel7E01G079800
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG060370, gene_TRIDC2AG060400 ... gene_TRIDC2BG063830, gene_TRIDC2BG063840, gene_TRIDC4AG066640, gene_TRIDC7AG003750
Poaceae	Triticum aestivum	17	TraesCS2A02G418200.1, TraesCS2A02G418300.1 ... TraesCS2A02G418400.1, TraesCS2B02G437200.1, TraesCS2B02G437300.2, TraesCS2B02G437400.2, TraesCS2D02G415600.1, TraesCS2D02G415700.1, TraesCS2D02G415800.1, TraesCS3A02G423600.1, TraesCS3B02G459200.1, TraesCS3B02G459300.1, TraesCS3D02G418900.2, TraesCS4A02G449700.1, TraesCS4A02G450300.1, TraesCS7A02G038600.1, TraesCS7D02G034800.1
Poaceae	Zea mays	5	Zm00001eb070720_P001, Zm00001eb070730_P002 ... Zm00001eb413670_P001, Zm00001eb430940_P003, Zm00001eb430990_P003
Poaceae	Zoysia japonica	6	nbis-gene-22863, nbis-gene-22864, nbis-gene-28740 ... nbis-gene-43855, nbis-gene-48565, nbis-gene-56611
Poaceae	Zoysia macrostachya	5	Zma_g20448, Zma_g20449, Zma_g23744, Zma_g29712, Zma_g31896
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1902, evm.TU.LG16.1050, evm.TU.LG20.1514 ... evm.TU.LG20.1538
Posidoniaceae	Posidonia oceanica	31	gene.Posoc01g28010, gene.Posoc02g13660, gene.Posoc03g14400 ... gene.Posoc03g14410, gene.Posoc03g14420, gene.Posoc03g14430, gene.Posoc03g14440, gene.Posoc03g14450, gene.Posoc03g14460, gene.Posoc05g04380, gene.Posoc05g04400, gene.Posoc06g16550, gene.Posoc08g08880, gene.Posoc10g06080, gene.Posoc10g06360, gene.Posoc10g09120, gene.Posoc10g09130, gene.Posoc10g09710, gene.Posoc10g09760, gene.Posoc10g09770, gene.Posoc10g10940, gene.Posoc10g10950, gene.Posoc10g10970, gene.Posoc10g10980, gene.Posoc10g11010, gene.Posoc10g11020, gene.Posoc10g11030, gene.Posoc10g11040, gene.Posoc10g11080, gene.Posoc10g11100, gene.Posoc10g11110
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.45444.1, evm.TU.Scaffold_1447_RagTag.1 ... evm.TU.Scaffold_9_RagTag.47, evm.TU.Scaffold_9_RagTag.48, evm.TU.Scaffold_9_RagTag.51
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-22142, nbisL1-mrna-22150, nbisL1-mrna-22152
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-10408
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-7637, nbisL1-mrna-7638, nbisL1-mrna-7640
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.30, evm.TU.utg000004l.170
Rhizophoraceae	Kandelia obovata	1	Maker00017708
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-16777
Rhizophoraceae	Rhizophora mangle	9	nbisL1-mrna-12772, nbisL1-mrna-12783, nbisL1-mrna-12787 ... nbisL1-mrna-12794, nbisL1-mrna-14398, nbisL1-mrna-14404, nbisL1-mrna-14409, nbisL1-mrna-19495, nbisL1-mrna-21589
Salicaceae	Populus euphratica	4	populus_peu03769, populus_peu23176, populus_peu23179 ... populus_peu34616
Solanaceae	Lycium barbarum	3	gene-LOC132616756, gene-LOC132618120, gene-LOC132618123
Solanaceae	Solanum chilense	1	SOLCI004296100
Solanaceae	Solanum pennellii	1	gene-LOC107024043
Tamaricaceae	Reaumuria soongarica	2	gene_5745, gene_5922
Tamaricaceae	Tamarix chinensis	3	TC02G2302, TC02G3284, TC02G3285
Zosteraceae	Zostera marina	9	Zosma01g23060.v3.1, Zosma01g35550.v3.1, Zosma01g42800.v3.1 ... Zosma03g12080.v3.1, Zosma03g12210.v3.1, Zosma04g03980.v3.1, Zosma05g19730.v3.1, Zosma277g00040.v3.1, Zosma277g00070.v3.1