halophFGD

Basic Information

Locus ID: Ag10G02923

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the RecA family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	238165325	238181874	-	Ag10G02923

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.75	43,782.69 Da	34.56	92.85	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00154	recA bacterial DNA recombination protein	198	288	1.7E-31	IPR013765
Pfam	PF00154	recA bacterial DNA recombination protein	78	196	4.6E-48	IPR013765
SUPERFAMILY	SSF54752	RecA protein, C-terminal domain	316	370	9.81E-17	IPR023400
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	77	287	4.04E-36	IPR027417
Gene3D	G3DSA:3.40.50.300	-	105	196	9.1E-33	IPR027417
Gene3D	G3DSA:3.40.50.300	-	197	297	1.0E-24	IPR027417
Gene3D	G3DSA:3.30.250.10	-	315	372	4.0E-20	-
ProSiteProfiles	PS50162	RecA family profile 1.	106	170	15.149579	IPR020588
ProSiteProfiles	PS50163	RecA family profile 2.	217	289	27.442717	IPR020587
ProSitePatterns	PS00321	recA signature.	231	239	-	IPR020584
PRINTS	PR00142	RecA protein signature	163	192	1.3E-22	IPR013765
PRINTS	PR00142	RecA protein signature	263	292	1.3E-22	IPR013765

Gene Ontology

Biological Process:

GO:0006259 (DNA metabolic process) GO:0006281 (DNA repair)

Molecular Function:

GO:0003677 (DNA binding) GO:0003697 (single-stranded DNA binding) GO:0005524 (ATP binding) GO:0008094 (ATP-dependent activity, acting on DNA)

KEGG Pathway

KO Term:

K03553 (recombination protein RecA)

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G79050.1	recA DNA recombination family protein.
RefSeq	XP_017258978.1	PREDICTED: DNA repair protein recA homolog 1, chloroplastic [Daucus carota subsp. sativus]
Swiss-Prot	Q39199	DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1
TrEMBL	A0A2G9I9R9	DNA repair protein RAD51/RHP55 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_00747 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	11.322273	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.354508	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.725557	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	6.058167	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.730357	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.888484	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	5.292686	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.066851	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	13.871579	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	13.740877	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	16.318546	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	16.02228	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.124009	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.591548	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.08474	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.404384	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.633181	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.414328	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.748142	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	13.770946	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	13.01062	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.734744	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.646497	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.307329	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.578909	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	10.835138	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.947922	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.788246	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	10.818563	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.293656		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.711947		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.298963		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.404207		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.737033		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.488373		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.546298		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.064763		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.702956		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.674307	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.17026	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.7222	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.387476	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.766489	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.866546	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.03892	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.654688	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.34452	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.239676	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.48772	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.580234	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15413, jg20582, jg32367, jg32916, jg4300
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11024, gene_4617, gene_7669
Amaranthaceae	Atriplex hortensis	3	Ah007405, Ah015172, Ah022007
Amaranthaceae	Beta vulgaris	1	BVRB_3g062120
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18396, Sbi_jg18962, Sbi_jg36798, Sbi_jg37416 ... Sbi_jg59417, Sbi_jg63229
Amaranthaceae	Salicornia europaea	3	Seu_jg23662, Seu_jg4718, Seu_jg5257
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00014743, GOSA_00020746, GOSA_00024178
Amaranthaceae	Suaeda glauca	7	Sgl02796, Sgl07923, Sgl22464, Sgl27680, Sgl41785, Sgl41786 ... Sgl46587
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000009222, gene:ENSEOMG00000012094 ... gene:ENSEOMG00000026919, gene:ENSEOMG00000030614, gene:ENSEOMG00000031839, gene:ENSEOMG00000043365, gene:ENSEOMG00000044628, gene:ENSEOMG00000046222
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0021890, CQ.Regalona.r1.4AG0015950 ... CQ.Regalona.r1.4BG0014080, CQ.Regalona.r1.8AG0014760, CQ.Regalona.r1.8BG0015980
Anacardiaceae	Pistacia vera	3	pistato.v30164210, pistato.v30185770, pistato.v30259480
Apiaceae	Apium graveolens	4	Ag10G01443, Ag10G02923, Ag2G01505, Ag5G01569
Arecaceae	Cocos nucifera	3	COCNU_04G008610, COCNU_09G001050, COCNU_14G009260
Arecaceae	Phoenix dactylifera	3	gene-LOC103696257, gene-LOC103714685, gene-LOC103723937
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1944.V1.1, AsparagusV1_05.87.V1.1 ... AsparagusV1_07.3483.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G25414, Ftri15G00504, Ftri15G06633, Ftri3G03501
Brassicaceae	Arabidopsis thaliana	4	AT1G79050.1, AT2G19490.1, AT3G10140.1, AT3G32920.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10018594m.g.v1.0, Thhalv10020901m.g.v1.0 ... Thhalv10022701m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g08420.v2.2, Sp3g32870.v2.2, Sp5g34100.v2.2
Brassicaceae	Brassica nigra	5	BniB02g015630.2N, BniB03g023610.2N, BniB03g068780.2N ... BniB05g074790.2N, BniB06g050620.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1598, Ceq04G1001, Ceq06G0847
Casuarinaceae	Casuarina glauca	3	Cgl01G1764, Cgl04G1132, Cgl06G0872
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g04220, gene.Cymno11g11360, gene.Cymno14g10860
Dunaliellaceae	Dunaliella salina	1	Dusal.0151s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g01200, gene.Thate05g03390, gene.Thate09g10070
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9314
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2520, evm.TU.LG05.1046, evm.TU.LG07.1249
Plantaginaceae	Plantago ovata	3	Pov_00006763, Pov_00038048, Pov_00039633
Plumbaginaceae	Limonium bicolor	4	Lb2G11606, Lb3G16114, Lb4G23234, Lb4G24730
Poaceae	Echinochloa crus-galli	11	AH01.1240, AH02.4208, AH02.4481, BH01.1486, BH02.4233 ... BH02.4533, BH04.1089, CH02.4259, CH02.4584, CH04.1271, CH06.2641
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0043280, gene-QOZ80_1BG0093200 ... gene-QOZ80_3AG0224540, gene-QOZ80_3BG0269660
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0305240.1, HORVU.MOREX.r3.3HG0319320.1 ... HORVU.MOREX.r3.5HG0508640.1
Poaceae	Lolium multiflorum	3	gene-QYE76_057130, gene-QYE76_057959, gene-QYE76_063512
Poaceae	Oryza coarctata	6	Oco01G027500, Oco02G028580, Oco02G030920, Oco05G018750 ... Oco06G019540, Oco22G005490
Poaceae	Oryza sativa	4	LOC_Os01g67510.1, LOC_Os01g71690.2, LOC_Os03g43850.1 ... LOC_Os11g19720.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G145900, gene-BS78_03G370100, gene-BS78_K141300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104476, Pt_Chr0207353, Pt_Chr0600272, Pt_Chr0600304
Poaceae	Sporobolus alterniflorus	10	Chr01G009510, Chr02G001220, Chr03G022070, Chr05G031050 ... Chr05G033430, Chr07G023590, Chr08G020000, Chr0G024230, Chr0G031560, Chr12G027490
Poaceae	Thinopyrum elongatum	4	Tel3E01G625800, Tel3E01G777600, Tel5E01G598600 ... Tel6E01G748200
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG056180, gene_TRIDC3AG068210 ... gene_TRIDC3BG062860, gene_TRIDC3BG077200, gene_TRIDC5AG055060, gene_TRIDC5BG059060
Poaceae	Triticum aestivum	9	TraesCS3A02G394500.1, TraesCS3A02G484100.1 ... TraesCS3B02G426500.1, TraesCS3B02G530900.1, TraesCS3D02G388300.1, TraesCS3D02G479500.1, TraesCS5A02G376100.1, TraesCS5B02G379700.1, TraesCS5D02G386100.1
Poaceae	Zea mays	4	Zm00001eb050740_P001, Zm00001eb141480_P006 ... Zm00001eb144420_P002, Zm00001eb365600_P001
Poaceae	Zoysia japonica	3	nbis-gene-11092, nbis-gene-20435, nbis-gene-28182
Poaceae	Zoysia macrostachya	4	Zma_g11925, Zma_g18707, Zma_g3207, Zma_g9202
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2194, evm.TU.LG07.434, evm.TU.LG08.1605 ... evm.TU.LG14.1348, evm.TU.LG15.509, evm.TU.LG22.503
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g07770, gene.Posoc07g10120, gene.Posoc08g07150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.525, evm.TU.Scaffold_2_RagTag.1193 ... evm.TU.Scaffold_5_RagTag.103
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-10504, nbisL1-mrna-12996, nbisL1-mrna-3844
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12771, nbisL1-mrna-17267, nbisL1-mrna-5363
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10671, nbisL1-mrna-16913, nbisL1-mrna-18798
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000006l.61, evm.TU.utg000009l.511 ... evm.TU.utg000033l.364
Rhizophoraceae	Kandelia obovata	3	Maker00005186, Maker00013790, Maker00014801
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12413, nbisL1-mrna-4018, nbisL1-mrna-9280
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-5529, nbisL1-mrna-6917, nbisL1-mrna-8182
Salicaceae	Populus euphratica	5	populus_peu00265, populus_peu05057, populus_peu05064 ... populus_peu11925, populus_peu26079
Solanaceae	Lycium barbarum	4	gene-LOC132607484, gene-LOC132617321, gene-LOC132624595 ... gene-LOC132640056
Solanaceae	Solanum chilense	3	SOLCI000424700, SOLCI004293900, SOLCI006871600
Solanaceae	Solanum pennellii	3	gene-LOC107002771, gene-LOC107018851, gene-LOC107025835
Tamaricaceae	Reaumuria soongarica	3	STRG.18129_chr09_-, gene_5108, gene_6052
Tamaricaceae	Tamarix chinensis	3	TC02G3676, TC06G2513, TC12G1159
Zosteraceae	Zostera marina	4	Zosma03g15350.v3.1, Zosma03g34760.v3.1, Zosma06g02240.v3.1 ... Zosma256g00080.v3.1