Basic Information
Locus ID:
Ag10G02920
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentacotripeptide-repeat region of PRORP
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 238147296 | 238148840 | - | Ag10G02920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 41,702.38 Da | 25.62 | 93.41 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 64 | 112 | 1.0E-15 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1 | 21 | 0.58 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 280 | 325 | 2.8E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 204 | 253 | 2.7E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 134 | 183 | 6.4E-22 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 10 | 203 | 1.1E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 275 | 366 | 6.8E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 156 | 274 | 1.2E-34 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 155 | 2.8E-42 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 282 | 316 | 1.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 102 | 135 | 5.1E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 172 | 206 | 3.4E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 137 | 171 | 7.0E-12 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 68 | 101 | 2.8E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 207 | 241 | 5.7E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 243 | 264 | 9.6E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 280 | 314 | 12.67132 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 135 | 169 | 14.808774 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 100 | 134 | 13.756489 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 170 | 204 | 12.287675 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 65 | 99 | 12.517862 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 205 | 239 | 11.081932 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61400.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_017232167.1 | PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166H2L6 | Pentatricopeptide repeat-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.24501 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.145836 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.201618 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.529523 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.060687 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.401059 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.731784 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.613438 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.187188 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.932742 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.664946 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.465806 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.173059 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.341624 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.782611 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.303683 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.928575 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.261806 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.898651 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.010876 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.427553 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.36251 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.15862 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.835633 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.242141 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.073901 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.058964 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.990693 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.255919 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.229242 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.411317 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.791218 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.476211 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.224383 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.125923 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.231923 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.799991 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.285981 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.221666 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.201275 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.28323 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.207238 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.968768 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.168287 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.180322 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.926614 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.336427 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25739 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114320 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31086, Sbi_jg31087, Sbi_jg58186 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25800 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004663 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006569, gene:ENSEOMG00000021586 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144380 |
| Apiaceae | Apium graveolens | 1 | Ag10G02920 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3138.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G25377 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G61400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005336m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB07g041170.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.639 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011897 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01801, Lb2G14045, Lb2G14046 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.2277 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534900, gene-QOZ80_6BG0488090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0484770.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005089 |
| Poaceae | Oryza coarctata | 2 | Oco17G004930, Oco18G004970 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g25050.1, LOC_Os10g15160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G072400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702222, Pt_Chr0702237 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G010270, Chr14G013680, Chr21G012810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G374300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG036520, gene_TRIDC5BG038530 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G229600.1.cds1, TraesCS5B02G228400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb312410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30868 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30296 |
| Posidoniaceae | Posidonia oceanica | 8 | gene.Posoc01g24530, gene.Posoc02g11950, gene.Posoc02g15500 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28766, nbisL1-mrna-28767, nbisL1-mrna-28772 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11264 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1755 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000224 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22610 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1570 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600546 |
| Solanaceae | Solanum chilense | 1 | SOLCI005511700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10187 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2365 |