Basic Information
Locus ID:
Ag10G02862
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 236895404 | 236898262 | - | Ag10G02862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 51,958.74 Da | 40.76 | 84.65 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 107 | 355 | 6.18222E-115 | - |
| Pfam | PF00069 | Protein kinase domain | 110 | 356 | 6.3E-70 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 105 | 378 | 1.48E-84 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 99 | 415 | 2.0E-87 | - |
| SMART | SM00220 | serkin_6 | 108 | 356 | 7.7E-95 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 108 | 356 | 49.601166 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 114 | 137 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 221 | 233 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 420 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12680.1 | phosphoenolpyruvate carboxylase-related kinase 2. | 0 |
| RefSeq | XP_017237343.1 | PREDICTED: serine/threonine-protein kinase PEPKR2-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8W490 | Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana OX=3702 GN=PEPKR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161YUH8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009574 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.61869 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.4833 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.243431 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.538386 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.54243 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.768914 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.689136 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.475378 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.165668 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.586627 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.202547 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.967319 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.374401 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.614693 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.654057 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.31038 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.17572 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.070284 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.104112 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.224441 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.952877 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.041477 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.895128 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.391915 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.268658 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.132802 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.378644 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.45484 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.403575 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.427179 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.081892 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.17218 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.804722 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.026052 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.958702 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.298673 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.317487 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.688887 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.853193 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.474491 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.91487 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.590961 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.193558 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.782087 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.349427 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.061785 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.908234 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.409228 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.396658 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.617938 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26347, jg28510 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21528, gene_23354 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009373, Ah023770 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g007970, BVRB_9g212210 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10870, Sbi_jg4128, Sbi_jg47449, Sbi_jg49669 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21694, Seu_jg5590 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001064, GOSA_00018748 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl10532, Sgl15792, Sgl55622, Sgl60833 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000014430, gene:ENSEOMG00000015209 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0011070, CQ.Regalona.r1.1BG0014820 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041570 |
| Apiaceae | Apium graveolens | 2 | Ag10G02862, Ag9G00293 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007300, COCNU_13G003640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711011, gene-LOC103723175 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.343.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G18727, Ftri14G28939 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G12680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007542m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g11280.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g007570.2N, BniB03g005280.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1239, Ceq09G0609 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1344, Cgl09G0648 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g04220 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g16560, gene.Thate06g21300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1176 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002150 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28486 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2232, AH08.1844, BH03.2170, BH08.1926, CH03.2563 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0538160, gene-QOZ80_6BG0491400 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0487690.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005762, gene-QYE76_031076, gene-QYE76_031100 |
| Poaceae | Oryza coarctata | 2 | Oco17G007010, Oco18G007170 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g29170.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G209600, gene-BS78_07G167900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701797, Pt_Chr0701829 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr10G008350, Chr14G015530, Chr16G015940, Chr20G003890 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G395600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG038590, gene_TRIDC5BG040670 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G246700.1, TraesCS5B02G243700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb019060_P001, Zm00001eb038470_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-30569, nbis-gene-47675, nbis-gene-47676 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23148, Zma_g30473 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g17620 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.949, evm.TU.Scaffold_8_RagTag.793 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18956 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14360, nbisL1-mrna-18050, nbisL1-mrna-2766 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20519, nbisL1-mrna-6780 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.725, evm.TU.utg000018l.489 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003727, Maker00010326 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11518, nbisL1-mrna-13040 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10194, nbisL1-mrna-17017 |
| Salicaceae | Populus euphratica | 4 | populus_peu14386, populus_peu15475, populus_peu22757 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598823, gene-LOC132645122 |
| Solanaceae | Solanum chilense | 2 | SOLCI000741000, SOLCI005888900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004044 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5860_chr02_+, gene_8345 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0021 |