Basic Information
Locus ID:
Ag10G02835
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
DBR1
Description:
Lariat debranching
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 236412661 | 236417751 | - | Ag10G02835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 47,887.61 Da | 46.19 | 80.98 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00844 | MPP_Dbr1_N | 3 | 259 | 6.51929E-170 | IPR041816 |
| Pfam | PF05011 | Lariat debranching enzyme, C-terminal domain | 244 | 363 | 6.0E-29 | IPR007708 |
| Pfam | PF00149 | Calcineurin-like phosphoesterase | 1 | 229 | 5.8E-10 | IPR004843 |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 1 | 253 | 1.32E-27 | IPR029052 |
| Gene3D | G3DSA:3.60.21.10 | - | 10 | 255 | 1.9E-6 | IPR029052 |
| SMART | SM01124 | DBR1_2 | 235 | 366 | 9.9E-36 | IPR007708 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31770.1 | debranching enzyme 1. Encodes a RNA lariat debranching enzyme required for embryogenesis. | 0 |
| RefSeq | XP_017257975.1 | PREDICTED: lariat debranching enzyme [Daucus carota subsp. sativus] | 0 |
| Q94K01 | Lariat debranching enzyme OS=Arabidopsis thaliana OX=3702 GN=DBR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZWS8 | DBR1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020033 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.846274 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.586325 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.722848 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.364677 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.527867 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.131147 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.16766 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.165523 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.109108 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.793657 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.768845 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.938852 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.99588 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.597927 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.352264 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.930616 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.57497 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.74853 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.907495 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.487969 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.747033 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.896912 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.361822 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.994455 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.344608 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.495576 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.852252 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.373451 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.342107 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.511827 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.65329 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.572218 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.528672 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.952352 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.274474 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.282634 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.996693 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.392792 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.937186 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.32783 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.344065 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.75267 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.228809 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.051626 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.00978 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.960921 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.753466 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.16831 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.348991 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.566245 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1491 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8824 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036471 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg39550, Sbi_jg39551, Sbi_jg54773 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14785 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00029058 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12692, Sgl17939 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019737, gene:ENSEOMG00000032963 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0020250, CQ.Regalona.r1.1BG0004690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30251290 |
| Apiaceae | Apium graveolens | 1 | Ag10G02835 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G001000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707651 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2366.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri2G27091, Ftri2G32215, Ftri8G07177 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025305m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29560.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g085510.2N, BniB03g010230.2N, BniB06g035350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2495 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2723 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0363s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.878 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025024, Pov_00037140 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23390 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.763, BH01.905, CH01.923 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0218160, gene-QOZ80_3BG0263440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0338760.2 |
| Poaceae | Oryza coarctata | 3 | Oco05G022240, Oco06G022790, Oco06G023130 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G098000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107489, Pt_Chr0107497 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G027610, Chr07G026520, Chr10G018910, Chr19G014190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G096000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040360, gene_TRIDC4BG008760 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G258100.1, TraesCS4B02G056400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb215780_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14914, nbis-gene-15987 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2908 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG12.1728 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26950 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.928, evm.TU.Scaffold_10_RagTag.929 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13551 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10813 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9175 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.225 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004040 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3715 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7787 |
| Salicaceae | Populus euphratica | 1 | populus_peu04652 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603337 |
| Solanaceae | Solanum chilense | 1 | SOLCI004546700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107024069, gene-LOC114077932 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1808 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2771 |
| Zosteraceae | Zostera marina | 2 | Zosma06g07340.v3.1, Zosma06g07370.v3.1 |