halophFGD

Basic Information

Locus ID: Ag10G02831

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: In Between Ring fingers

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	236345514	236347894	-	Ag10G02831

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.58	35,386.72 Da	55.02	63.28	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01485	IBR domain, a half RING-finger domain	257	306	6.3E-10	IPR002867
Pfam	PF01485	IBR domain, a half RING-finger domain	180	237	2.9E-10	IPR002867
SUPERFAMILY	SSF57850	RING/U-box	181	242	5.3E-7	-
SUPERFAMILY	SSF57850	RING/U-box	103	186	8.83E-14	-
SUPERFAMILY	SSF57850	RING/U-box	251	308	6.36E-16	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	101	190	1.5E-14	IPR013083
Gene3D	G3DSA:1.20.120.1750	-	235	311	3.7E-16	-
SMART	SM00647	ibrneu5	248	311	0.012	IPR002867
SMART	SM00647	ibrneu5	175	237	2.4E-11	IPR002867
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	107	155	9.951762	IPR001841
ProSiteProfiles	PS51873	TRIAD supradomain profile.	103	311	27.401062	IPR044066

KEGG Pathway

KO Term:

K11975 (E3 ubiquitin-protein ligase RNF144 [EC:2.3.2.31])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G14250.1	RING/U-box superfamily protein.
RefSeq	XP_017254600.1	PREDICTED: probable E3 ubiquitin-protein ligase RNF217 isoform X1 [Daucus carota subsp. sativus]
TrEMBL	A0A161ZZ35	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020035 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	4.135183	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.920939	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.959011	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.574652	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.293558	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	23.503786	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	21.686777	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	13.360537	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.132905	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.412293	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.000215	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.949304	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.059677	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.255905	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.252328	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.941316	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.005264	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.560686	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.683334	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.099041	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.987913	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.564567	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.487948	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.807928	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	5.758537	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.750163	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.973395	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.304786	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	2.816039	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.653669		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.897535		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.465271		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	16.396351		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.388707		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	14.490776		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	11.488282		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.701943		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.645813		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.386827	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.034379	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.271033	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.314995	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	34.984867	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	31.971575	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	46.293179	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.118911	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	70.746475	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.310924	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.347069	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.70828	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg13440, jg13441, jg26189, jg30320, jg32838, jg6163
Aizoaceae	Mesembryanthemum crystallinum	7	gene_14931, gene_15810, gene_6679, gene_6680, gene_6681 ... gene_9238, gene_9376
Amaranthaceae	Atriplex hortensis	6	Ah014991, Ah028708, Ah028709, Ah028710, Ah028711, Ah031359
Amaranthaceae	Beta vulgaris	3	BVRB_7g169260, BVRB_7g169270, BVRB_8g191110
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1974, Sbi_jg1975, Sbi_jg24737, Sbi_jg34533, Sbi_jg8599 ... Sbi_jg34535
Amaranthaceae	Salicornia europaea	4	Seu_jg20007, Seu_jg2795, Seu_jg2796, Seu_jg2797
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002771, GOSA_00011617, GOSA_00022326
Amaranthaceae	Suaeda glauca	8	Sgl42712, Sgl47448, Sgl73390, Sgl73391, Sgl73392, Sgl76912 ... Sgl76913, Sgl76914
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000005373, gene:ENSEOMG00000005527 ... gene:ENSEOMG00000009366, gene:ENSEOMG00000010127, gene:ENSEOMG00000034874, gene:ENSEOMG00000038120, gene:ENSEOMG00000040060, gene:ENSEOMG00000046774
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.7BG0024550, CQ.Regalona.r1.8AG0016830 ... CQ.Regalona.r1.8BG0017970, CQ.Regalona.r1.9BG0006820, CQ.Regalona.r1.9BG0006830
Anacardiaceae	Pistacia vera	15	pistato.v30120240, pistato.v30120250, pistato.v30130840 ... pistato.v30208860, pistato.v30208870, pistato.v30211070, pistato.v30211080, pistato.v30211110, pistato.v30211120, pistato.v30245810, pistato.v30245820, pistato.v30245840, pistato.v30245850, pistato.v30245870, pistato.v30245880
Apiaceae	Apium graveolens	15	Ag10G00194, Ag10G01383, Ag10G01388, Ag10G01389, Ag10G02831 ... Ag10G02832, Ag11G05060, Ag4G00189, Ag8G01653, Ag9G00085, Ag9G00086, Ag9G00087, Ag9G01033, Ag9G02483, Ag9G02484
Arecaceae	Cocos nucifera	4	COCNU_03G005070, COCNU_03G005080, COCNU_03G005090 ... COCNU_08G003100
Arecaceae	Phoenix dactylifera	2	gene-LOC103712589, gene-LOC103712610
Asparagaceae	Asparagus officinalis	2	AsparagusV1_08.2651.V1.1, AsparagusV1_09.356.V1.1
Asteraceae	Flaveria trinervia	4	Ftri15G33614, Ftri17G06314, Ftri3G05052, Ftri4G24233
Brassicaceae	Arabidopsis thaliana	2	AT3G14250.1, AT3G53690.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10000966m.g.v1.0, Thhalv10021941m.g.v1.0 ... Thhalv10021980m.g.v1.0, Thhalv10022329m.g.v1.0, Thhalv10022375m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g12540.v2.2, Sp4g07320.v2.2, Sp5g15900.v2.2
Brassicaceae	Brassica nigra	6	BniB01g050820.2N, BniB01g055750.2N, BniB02g025650.2N ... BniB05g043700.2N, BniB05g066360.2N, BniB07g027600.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0654
Casuarinaceae	Casuarina glauca	1	Cgl05G0668
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno08g04540, gene.Cymno09g01760, gene.Cymno11g09690
Dunaliellaceae	Dunaliella salina	2	Dusal.0494s00012.v1.0, Dusal.4315s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g04560, gene.Thate04g14660, gene.Thate09g20080
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3363
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.629, evm.TU.LG01.632, evm.TU.LG07.768
Plantaginaceae	Plantago ovata	21	Pov_00000652, Pov_00002112, Pov_00003969, Pov_00003970 ... Pov_00007470, Pov_00007473, Pov_00015790, Pov_00020076, Pov_00020077, Pov_00020078, Pov_00020079, Pov_00020080, Pov_00020081, Pov_00022907, Pov_00032485, Pov_00032496, Pov_00037130, Pov_00037132, Pov_00037134, Pov_00041656, Pov_00041657
Plumbaginaceae	Limonium bicolor	5	Lb2G11297, Lb3G16847, Lb3G18822, Lb4G21992, Lb4G24088
Poaceae	Echinochloa crus-galli	20	AH03.1936, AH03.1937, AH03.1938, AH03.1939, AH08.1738 ... AH08.1739, AH08.1740, BH03.1994, BH03.1995, BH03.1997, BH03.1998, BH08.1784, BH08.1785, BH08.1786, CH03.2272, CH03.2273, CH03.2274, CH08.1941, CH08.1944, CH08.34
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_6AG0535310, gene-QOZ80_6AG0535330 ... gene-QOZ80_6BG0488560, gene-QOZ80_6BG0488580, gene-QOZ80_6BG0488600, gene-QOZ80_6BG0488610, gene-QOZ80_6BG0489390, gene-QOZ80_8AG0632840, gene-QOZ80_8AG0632850, gene-QOZ80_8BG0661880, gene-QOZ80_8BG0661900, gene-QOZ80_8BG0661910
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0207090.1, HORVU.MOREX.r3.2HG0211990.1 ... HORVU.MOREX.r3.2HG0212000.1, HORVU.MOREX.r3.5HG0483860.1, HORVU.MOREX.r3.5HG0483880.1, HORVU.MOREX.r3.5HG0483890.1, HORVU.MOREX.r3.6HG0557260.1, HORVU.MOREX.r3.6HG0601390.1
Poaceae	Lolium multiflorum	14	gene-QYE76_005156, gene-QYE76_005157, gene-QYE76_005158 ... gene-QYE76_005161, gene-QYE76_005169, gene-QYE76_005171, gene-QYE76_005172, gene-QYE76_005173, gene-QYE76_005174, gene-QYE76_008532, gene-QYE76_039900, gene-QYE76_053888, gene-QYE76_053890, gene-QYE76_053895
Poaceae	Oryza coarctata	9	Oco15G013440, Oco16G009100, Oco17G005000, Oco17G005010 ... Oco17G005020, Oco18G002450, Oco18G005030, Oco18G005040, Oco18G005050
Poaceae	Oryza sativa	6	LOC_Os08g35060.1, LOC_Os08g35070.1, LOC_Os09g11170.1 ... LOC_Os09g25190.1, LOC_Os09g25220.1, LOC_Os09g25260.1
Poaceae	Paspalum vaginatum	14	gene-BS78_02G184400, gene-BS78_02G184500 ... gene-BS78_05G244200, gene-BS78_05G244300, gene-BS78_05G244400, gene-BS78_05G244500, gene-BS78_05G244600, gene-BS78_05G245300, gene-BS78_05G245400, gene-BS78_05G245500, gene-BS78_05G246400, gene-BS78_07G154400, gene-BS78_07G154500, gene-BS78_07G154600
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0105651, Pt_Chr0105676, Pt_Chr0500999, Pt_Chr0603376 ... Pt_Chr0603417, Pt_Chr0702172
Poaceae	Sporobolus alterniflorus	11	Chr10G009850, Chr10G009860, Chr10G009870, Chr14G014070 ... Chr14G014080, Chr14G014090, Chr16G014760, Chr17G014150, Chr17G014160, Chr21G013130, Chr21G013140
Poaceae	Thinopyrum elongatum	16	Tel1E01G033700, Tel2E01G259200, Tel2E01G341000 ... Tel2E01G347500, Tel2E01G896600, Tel2E01G897100, Tel2E01G931200, Tel2E01G932300, Tel5E01G367300, Tel5E01G367400, Tel5E01G367500, Tel5E01G367600, Tel5E01G367700, Tel5E01G651200, Tel6E01G243500, Tel6E01G465300
Poaceae	Triticum dicoccoides	20	gene_TRIDC2AG022810, gene_TRIDC2AG031140 ... gene_TRIDC2AG073860, gene_TRIDC2AG076290, gene_TRIDC2BG026490, gene_TRIDC2BG026500, gene_TRIDC2BG026820, gene_TRIDC2BG026830, gene_TRIDC2BG080620, gene_TRIDC2BG083490, gene_TRIDC5AG035910, gene_TRIDC5AG035940, gene_TRIDC5AG059980, gene_TRIDC5BG037770, gene_TRIDC5BG037780, gene_TRIDC5BG037790, gene_TRIDC5BG064150, gene_TRIDC6AG038290, gene_TRIDC6BG019850, gene_TRIDC6BG045290
Poaceae	Triticum aestivum	36	TraesCS2A02G178500.1, TraesCS2A02G526800.2 ... TraesCS2A02G527000.1, TraesCS2A02G545900.1, TraesCS2A02G546000.1, TraesCS2B02G144500.1, TraesCS2B02G203600.1, TraesCS2B02G205500.1, TraesCS2B02G557100.1, TraesCS2B02G557600.1, TraesCS2B02G576800.1, TraesCS2B02G577000.1, TraesCS2D02G125100.1, TraesCS2D02G184500.1, TraesCS2D02G184700.1, TraesCS2D02G187100.1, TraesCS2D02G529500.1, TraesCS2D02G529800.1, TraesCS2D02G547100.1, TraesCS2D02G547300.1, TraesCS5A02G224400.1, TraesCS5A02G224700.1, TraesCS5A02G224900.1, TraesCS5B02G223200.1, TraesCS5B02G223300.1.cds1, TraesCS5B02G223400.1, TraesCS5B02G223500.1, TraesCS5D02G231800.1, TraesCS5D02G231900.1, TraesCS5D02G232000.1, TraesCS5D02G232100.1.cds1, TraesCS5D02G423000.1, TraesCS6A02G248600.1, TraesCS6B02G138600.1, TraesCS6D02G230700.1, TraesCS7D02G415800.1
Poaceae	Zea mays	4	Zm00001eb177170_P001, Zm00001eb177180_P001 ... Zm00001eb312930_P001, Zm00001eb312940_P002
Poaceae	Zoysia japonica	8	nbis-gene-17101, nbis-gene-20052, nbis-gene-30810 ... nbis-gene-56692, nbis-gene-57566, nbis-gene-57787, nbis-gene-58064, nbis-gene-7930
Poaceae	Zoysia macrostachya	3	Zma_g21128, Zma_g24155, Zma_g32406
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.1141, evm.TU.LG03.169, evm.TU.LG03.170 ... evm.TU.LG07.976, evm.TU.LG12.1547, evm.TU.LG15.898, evm.TU.LG15.899, evm.TU.LG19.139, evm.TU.LG24.376
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g08480, gene.Posoc08g03420, gene.Posoc08g03470
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_10_RagTag.613, evm.TU.Scaffold_10_RagTag.614 ... evm.TU.Scaffold_1_RagTag.1154, evm.TU.Scaffold_3_RagTag.1523, evm.TU.Scaffold_3_RagTag.1524, evm.TU.Scaffold_4_RagTag.1060, evm.TU.Scaffold_4_RagTag.1061, evm.TU.Scaffold_6_RagTag.1127
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-13875, nbisL1-mrna-15528, nbisL1-mrna-1835 ... nbisL1-mrna-1837, nbisL1-mrna-1838, nbisL1-mrna-25831, nbisL1-mrna-25832, nbisL1-mrna-6464, nbisL1-mrna-6465, nbisL1-mrna-6467
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12028, nbisL1-mrna-1715, nbisL1-mrna-18223
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-1361, nbisL1-mrna-1362, nbisL1-mrna-2741 ... nbisL1-mrna-4266, nbisL1-mrna-4267, nbisL1-mrna-973
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000008l.253, add.evm.TU.utg000016l.345 ... add.evm.TU.utg000019l.136, evm.TU.utg000008l.684, evm.TU.utg000011l.720, evm.TU.utg000016l.812
Rhizophoraceae	Kandelia obovata	3	Maker00000666, Maker00000942, Maker00016632
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-10996, nbisL1-mrna-10997, nbisL1-mrna-13580 ... nbisL1-mrna-17520, nbisL1-mrna-18308, nbisL1-mrna-2040, nbisL1-mrna-23140
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-12894, nbisL1-mrna-13351, nbisL1-mrna-13352 ... nbisL1-mrna-4125, nbisL1-mrna-9384, nbisL1-mrna-9385
Salicaceae	Populus euphratica	7	populus_peu04158, populus_peu05239, populus_peu11654 ... populus_peu16727, populus_peu18787, populus_peu18882, populus_peu34987
Solanaceae	Lycium barbarum	16	gene-LOC132599209, gene-LOC132599210, gene-LOC132599211 ... gene-LOC132599212, gene-LOC132599219, gene-LOC132617466, gene-LOC132617860, gene-LOC132618430, gene-LOC132618955, gene-LOC132620254, gene-LOC132627687, gene-LOC132632931, gene-LOC132633112, gene-LOC132634315, gene-LOC132634391, gene-LOC132644851
Solanaceae	Solanum chilense	12	SOLCI001685700, SOLCI002149200, SOLCI002201500 ... SOLCI002734500, SOLCI002917000, SOLCI003767000, SOLCI005026200, SOLCI005982000, SOLCI006233400, SOLCI006233500, SOLCI006573000, SOLCI007522200
Solanaceae	Solanum pennellii	8	gene-LOC107012667, gene-LOC107012777, gene-LOC107014597 ... gene-LOC107016255, gene-LOC107023845, gene-LOC107026339, gene-LOC107026345, gene-LOC114076354
Tamaricaceae	Reaumuria soongarica	6	STRG.23101_chr05_+, STRG.30832_chr10_+, STRG.7861_chr04_- ... gene_13794, gene_2581, gene_2582
Tamaricaceae	Tamarix chinensis	4	TC01G2340, TC05G0586, TC05G0589, TC06G2098
Zosteraceae	Zostera marina	2	Zosma01g09990.v3.1, Zosma04g09030.v3.1