Basic Information
Locus ID:
Ag10G02809
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 235761416 | 235762667 | - | Ag10G02809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 42,801.88 Da | 46.05 | 77.50 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 22 | 65 | 4.0E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 106 | 7.06E-12 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 89 | 346 | 4.71E-16 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 64 | 1.4E-8 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 129 | 359 | 7.6E-9 | IPR015915 |
| SMART | SM00256 | fbox_2 | 25 | 65 | 5.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 10.265807 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43190.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017254894.1 | PREDICTED: F-box/kelch-repeat protein At5g43190 [Daucus carota subsp. sativus] | 0 |
| Q9FHS6 | F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana OX=3702 GN=At5g43190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164X1X3 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020047 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.398886 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.208563 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.199322 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.792448 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.912051 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 37.644474 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 27.655691 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 54.067081 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.500974 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.635038 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.771088 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.885846 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.17037 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.136486 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.442681 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.765182 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.777596 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.1415 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.262897 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.464525 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.013776 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.778646 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.435294 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.302795 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.953744 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.363612 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.167922 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.14251 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.615081 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.591681 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.479506 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.815167 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 60.944721 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 31.458506 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 74.015335 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 33.992542 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.311317 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 29.564934 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.152793 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.959043 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.728873 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 62.34668 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.508022 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 30.701353 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.893002 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 51.012203 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.982836 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.95415 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.879805 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.129589 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22712 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6041 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39668, Sbi_jg55046 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14639 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013176 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12513, Sgl17788 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036112, gene:ENSEOMG00000046960 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0007180 |
| Apiaceae | Apium graveolens | 1 | Ag10G02809 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G007030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720753, gene-LOC120107549 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1232.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G08060 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G43190.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g08010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g017740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1287 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1391 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32320, gene.Thate02g32330 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.338, evm.TU.LG06.339 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.590, evm.TU.LG15.353 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.821 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25628 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19251 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6655 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010367 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22032 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10075 |
| Salicaceae | Populus euphratica | 1 | populus_peu32057 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627772, gene-LOC132627773 |
| Solanaceae | Solanum chilense | 1 | SOLCI004852500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016123 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31059_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2650 |