Basic Information
Locus ID:
Ag10G02784
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Nucleoporin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 235386919 | 235391915 | + | Ag10G02784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 38,510.99 Da | 45.70 | 93.80 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 32 | 311 | 2.65E-19 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 352 | 1.3E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 110 | 151 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 58 | 101 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 245 | 2.5 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30840.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017255064.1 | PREDICTED: nuclear pore complex protein NUP43 [Daucus carota subsp. sativus] | 0 |
| Q24JJ9 | Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana OX=3702 GN=NUP43 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164X107 | Nuclear pore complex protein NUP43 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020091 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.59729 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.476652 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.578645 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.132753 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.255006 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.57976 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.907012 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.754137 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.608292 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.420689 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.772647 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.678843 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.906677 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.301351 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.74883 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.689814 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.020923 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.267394 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.768822 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.952623 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.330526 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.102969 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.508183 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.656724 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.529512 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.835474 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.330647 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.28761 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.558829 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.752156 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.017221 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.774528 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.706978 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.501329 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.275984 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.898382 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.516452 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.682812 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.09376 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.235328 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.576918 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.420253 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.87688 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.328543 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.878117 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.526857 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.901805 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.146266 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.522968 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.450077 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4021 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10873 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014913 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24786, Sbi_jg8652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19954 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022271 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42559, Sgl47313 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008845, gene:ENSEOMG00000011116 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0017270 |
| Apiaceae | Apium graveolens | 1 | Ag10G02784 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G005860, COCNU_14G005870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717092 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.301.V1.1, AsparagusV1_02.314.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G10959 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025548m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g085050.2N |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq03G2616, Ceq03G2618, Ceq03G2620, Ceq03G2624, Ceq03G2632 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2766, Cgl03G2769, Cgl03G2774 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05080 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0401s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06050 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7325 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.351 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015608 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.924, BH08.951, CH08.1073 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0624510, gene-QOZ80_8BG0652720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0005810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032285 |
| Poaceae | Oryza coarctata | 2 | Oco15G005270, Oco16G004980 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g16600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G098400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402807 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G008990, Chr29G008690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G076200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG003960, gene_TRIDC1BG004950 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G035000.1, TraesCS1B02G051100.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb038770_P001, Zm00001eb046820_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44730 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22730 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2601, evm.TU.LG23.824 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g24710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.187 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13398 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21234 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16616 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.121 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015088 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16646 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14574 |
| Salicaceae | Populus euphratica | 1 | populus_peu12196 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602908 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024389 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8231 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0932 |
| Zosteraceae | Zostera marina | 1 | Zosma06g15900.v3.1 |