halophFGD

Basic Information

Locus ID: Ag10G02776

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Ankyrin repeats (many copies)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	235282262	235290338	+	Ag10G02776

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.47	53,238.39 Da	47.73	89.06	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12796	Ankyrin repeats (3 copies)	88	208	2.0E-14	IPR020683
Pfam	PF12796	Ankyrin repeats (3 copies)	20	81	6.4E-8	IPR020683
Pfam	PF13857	Ankyrin repeats (many copies)	223	264	4.4E-8	-
SUPERFAMILY	SSF57850	RING/U-box	322	379	5.89E-6	-
SUPERFAMILY	SSF48403	Ankyrin repeat	20	277	2.99E-50	IPR036770
Gene3D	G3DSA:1.25.40.20	-	145	289	1.1E-25	IPR036770
Gene3D	G3DSA:1.25.40.20	-	12	144	1.0E-30	IPR036770
SMART	SM00248	ANK_2a	50	79	4.0E-5	IPR002110
SMART	SM00248	ANK_2a	223	252	7.2E-5	IPR002110
SMART	SM00248	ANK_2a	117	147	0.32	IPR002110
SMART	SM00248	ANK_2a	83	112	0.14	IPR002110
SMART	SM00248	ANK_2a	180	209	4.3E-5	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	50	81	12.301834	-
ProSiteProfiles	PS50088	Ankyrin repeat profile.	83	115	8.65621	IPR002110
ProSiteProfiles	PS50088	Ankyrin repeat profile.	50	82	13.41059	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	117	138	9.648697	-
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	323	373	9.243618	IPR001841
ProSiteProfiles	PS50088	Ankyrin repeat profile.	117	138	9.67119	IPR002110
ProSiteProfiles	PS50088	Ankyrin repeat profile.	180	212	12.3689	IPR002110
ProSiteProfiles	PS50088	Ankyrin repeat profile.	223	255	12.18193	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	223	254	10.975266	-
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	180	208	11.850801	-
ProSitePatterns	PS00518	Zinc finger RING-type signature.	338	347	-	IPR017907

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K19044 (E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G57740.1	XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase
RefSeq	XP_017258856.1	PREDICTED: E3 ubiquitin-protein ligase XBAT32 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q6KAE5	Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2
TrEMBL	A0A164X0L6	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020104 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	40.294323	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	26.412342	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	26.851068	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	28.531839	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	29.778025	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	35.044552	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	31.688305	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	40.697983	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	26.936613	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	27.8486	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	28.688734	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	28.612272	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	29.459488	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	23.451622	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.955095	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	21.397337	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	24.664465	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	15.954076	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.972057	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	13.285933	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	19.959053	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	20.167847	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	22.060814	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.621309	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	17.22633	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	21.787874	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	17.055576	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	19.266474	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	20.223434	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	10.898184		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	13.140772		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	11.594717		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	21.516361		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.916245		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	20.167891		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.00811		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.184996		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	9.476243		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	16.788189	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.507613	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.210415	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	28.760666	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	40.20472	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	114.091248	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	98.614914	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	20.49682	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	88.664886	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	21.397221	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.215137	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	20.582428	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14018, jg15641, jg2320, jg33121, jg33991
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10845, gene_16110
Amaranthaceae	Atriplex hortensis	4	Ah014845, Ah018937, Ah020886, Ah020888
Amaranthaceae	Beta vulgaris	1	BVRB_8g192200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15542, Sbi_jg24823, Sbi_jg56365, Sbi_jg8691
Amaranthaceae	Salicornia europaea	2	Seu_jg19917, Seu_jg26804
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006565, GOSA_00022232
Amaranthaceae	Suaeda glauca	4	Sgl02028, Sgl07181, Sgl42510, Sgl47240
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003949, gene:ENSEOMG00000009536 ... gene:ENSEOMG00000030442, gene:ENSEOMG00000035201, gene:ENSEOMG00000042441, gene:ENSEOMG00000044404
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0002520, CQ.Regalona.r1.3BG0002650 ... CQ.Regalona.r1.5BG0017860, CQ.Regalona.r1.8AG0017670, CQ.Regalona.r1.8BG0018750
Anacardiaceae	Pistacia vera	2	pistato.v30182440, pistato.v30264420
Apiaceae	Apium graveolens	5	Ag10G00070, Ag10G02628, Ag10G02629, Ag10G02776, Ag2G01985
Arecaceae	Cocos nucifera	6	COCNU_01G004360, COCNU_07G006970, COCNU_08G006480 ... COCNU_08G006490, COCNU_10G005190, COCNU_11G009130
Arecaceae	Phoenix dactylifera	6	gene-LOC103699530, gene-LOC103707121, gene-LOC103710468 ... gene-LOC103711156, gene-LOC103714157, gene-LOC103716708
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2555.V1.1, AsparagusV1_08.401.V1.1 ... AsparagusV1_10.1084.V1.1
Asteraceae	Flaveria trinervia	4	Ftri3G08493, Ftri4G01708, Ftri4G32617, Ftri8G02497
Brassicaceae	Arabidopsis thaliana	2	AT5G07270.1, AT5G57740.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013287m.g.v1.0, Thhalv10013312m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g19420.v2.2, Sp6g35620.v2.2
Brassicaceae	Brassica nigra	4	BniB02g037110.2N, BniB02g053620.2N, BniB05g028470.2N ... BniB05g037360.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2098, Ceq03G1173, Ceq05G0537
Casuarinaceae	Casuarina glauca	3	Cgl02G2171, Cgl03G1280, Cgl05G0569
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g05030, gene.Cymno05g08760, gene.Cymno14g04760
Dunaliellaceae	Dunaliella salina	3	Dusal.0060s00020.v1.0, Dusal.0120s00020.v1.0 ... Dusal.0250s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g12330, gene.Thate04g24770, gene.Thate07g07340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11810
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2698, evm.TU.LG07.407
Plantaginaceae	Plantago ovata	3	Pov_00000667, Pov_00015626, Pov_00040925
Plumbaginaceae	Limonium bicolor	1	Lb4G24381
Poaceae	Echinochloa crus-galli	12	AH01.3149, AH06.482, AH07.3747, AH08.906, BH01.3508 ... BH06.165, BH07.1940, BH07.3571, CH06.154, CH07.3636, CH08.1047, CH09.292
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0114220, gene-QOZ80_2AG0148590 ... gene-QOZ80_2BG0168020, gene-QOZ80_2BG0203970, gene-QOZ80_6AG0507080, gene-QOZ80_6BG0459140, gene-QOZ80_8AG0624260, gene-QOZ80_8BG0651980
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0051110.1, HORVU.MOREX.r3.6HG0623070.1 ... HORVU.MOREX.r3.7HG0643200.1, HORVU.MOREX.r3.7HG0658700.1
Poaceae	Lolium multiflorum	6	gene-QYE76_012144, gene-QYE76_016444, gene-QYE76_026086 ... gene-QYE76_026289, gene-QYE76_032299, gene-QYE76_032308
Poaceae	Oryza coarctata	8	Oco03G023930, Oco04G024470, Oco11G001310, Oco12G001220 ... Oco15G005170, Oco16G004890, Oco19G008370, Oco20G008220
Poaceae	Oryza sativa	4	LOC_Os02g54860.1, LOC_Os06g03800.1, LOC_Os08g15840.5 ... LOC_Os10g37730.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G309600, gene-BS78_01G359000 ... gene-BS78_07G100700, gene-BS78_10G021200
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0203812, Pt_Chr0303694, Pt_Chr0401920, Pt_Chr0402814 ... Pt_Chr0503012, Pt_Chr0503018
Poaceae	Sporobolus alterniflorus	14	Chr05G014770, Chr05G017530, Chr06G000630, Chr06G029210 ... Chr09G003030, Chr09G017950, Chr11G024010, Chr13G002140, Chr13G021810, Chr15G001870, Chr15G020400, Chr16G003470, Chr17G003170, Chr29G008820
Poaceae	Thinopyrum elongatum	5	Tel1E01G324900, Tel2E01G982100, Tel6E01G626500 ... Tel7E01G130600, Tel7E01G296500
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG028640, gene_TRIDC1BG032970 ... gene_TRIDC6AG052980, gene_TRIDC6BG061580, gene_TRIDC7AG006520, gene_TRIDC7AG017780, gene_TRIDC7BG007140
Poaceae	Triticum aestivum	12	TraesCS1A02G189100.1, TraesCS1B02G196800.1 ... TraesCS1D02G187300.1, TraesCS4A02G429100.1, TraesCS6A02G352300.1, TraesCS6B02G385200.1, TraesCS6D02G335000.2, TraesCS7A02G060700.1, TraesCS7A02G145900.1, TraesCS7B02G048300.1, TraesCS7D02G055500.1, TraesCS7D02G147400.1
Poaceae	Zea mays	5	Zm00001eb021320_P001, Zm00001eb178040_P001 ... Zm00001eb192640_P001, Zm00001eb269490_P002, Zm00001eb378520_P001
Poaceae	Zoysia japonica	6	nbis-gene-34432, nbis-gene-36123, nbis-gene-44701 ... nbis-gene-51169, nbis-gene-51170, nbis-gene-8460
Poaceae	Zoysia macrostachya	5	Zma_g12784, Zma_g14600, Zma_g15541, Zma_g22715, Zma_g31271
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2654, evm.TU.LG11.1603, evm.TU.LG16.1442 ... evm.TU.LG23.879
Posidoniaceae	Posidonia oceanica	10	gene.Posoc01g19400, gene.Posoc01g36140, gene.Posoc02g03990 ... gene.Posoc02g24810, gene.Posoc03g02670, gene.Posoc06g11590, gene.Posoc06g11610, gene.Posoc06g16450, gene.Posoc07g12900, gene.Posoc09g02980
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.211, evm.TU.Scaffold_4_RagTag.147 ... evm.TU.Scaffold_11_RagTag.1356
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12655, nbisL1-mrna-13366, nbisL1-mrna-29198
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15068, nbisL1-mrna-16283, nbisL1-mrna-7227
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12926, nbisL1-mrna-16639, nbisL1-mrna-2137
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.89, evm.TU.utg000010l.353 ... evm.TU.utg000033l.142
Rhizophoraceae	Kandelia obovata	4	Maker00000037, Maker00008459, Maker00008595, Maker00014619
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1060, nbisL1-mrna-16627, nbisL1-mrna-2368
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14598, nbisL1-mrna-20614, nbisL1-mrna-6257
Salicaceae	Populus euphratica	3	populus_peu05515, populus_peu29257, populus_peu30619
Solanaceae	Lycium barbarum	2	gene-LOC132602871, gene-LOC132631864
Solanaceae	Solanum chilense	1	SOLCI006529100
Solanaceae	Solanum pennellii	2	gene-LOC107015481, gene-LOC107026410
Tamaricaceae	Reaumuria soongarica	2	STRG.18817_chr07_-, gene_4140
Tamaricaceae	Tamarix chinensis	3	TC06G1662, TC12G0417, TC12G0418
Zosteraceae	Zostera marina	3	Zosma01g04350.v3.1, Zosma01g35410.v3.1, Zosma03g12500.v3.1